| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2391 |
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| Symbol | |
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| ID | 8133335 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 2749155 |
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| End bp | 2750528 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644865671 |
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| Product | multidrug efflux protein |
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| Protein accession | YP_003017958 |
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| Protein GI | 253688768 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.346064 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCAACAGT ATCTGACAGA AGCGCGTAAA TTATCGGCGC TTGCTGTTCC TGTCATTATT
GCGCAAGTGT CTCAAACGTC GATGGGTGTG GTTGATACCG TCATGGCCGG TGCCTATAGC
GCCACCGATA TGGCCGCCGT CGCCGTGGGA ACCTCTATCT GGCTACCCGC CATTCTTTTT
GGTCACGGTC TGCTGTTGGC ACTGACGCCC GTTGTCGCAC AGCTCAACGG TTCCGGTCGA
CGCGATCGCA TCTCGCATCA GGTACGACAA TCCTTTTTTC TGGCCGCCAT TATTTCCGTA
TTTACCATGC TGGCGCTGTA TCAAGGGGAA TATGCCATCA ATCTGATGAG CGACGATTCG
CCAGAACTGG CCGCGAAGGC TATCGGTTAC CTGCATGCGC TACTGTGGGG CGTACCCGGC
TATCTGTTCT ATCAGGTTTT ACGCTGCCAG TGCGAAGGGC TGTCCAAAAC CTACCCCGGC
ATGATGATTG GGTTCATCGG GTTGTTAATC AACATTCCGA TTAACTATGT CTTTATCCAC
GGCAAATTTG GTATGCCCGA ACTGGGCGGC GTAGGCTGCG GCGTCGCGAC CGCGTCGGTT
TACTGGATCA TGATGCTGTT GATGATGTTC TATACCCGGC ACGCCTCCTG GCTACGCGAT
ATCCGCCTGC ATCGCCCTGC ATTCCGTCTG GACGGTGCCG TGCTAAAACG CCTCTTTGGT
CTCGGTTTAC CCATCGCGTT GGCGCTGCTT TTTGAAGTCA CGTTGTTTGC CGTGGTGGCA
CTATTGGTGT TGCCGCTGGG CGTCGTCGAT GTGGCTGGTC ACCAGATTGC CCTGAACTTC
AGTTCGCTGA TGTTCGTCCT TCCGCTCTCG GTTGGCGTTG CCACTACCAT TCGCGTCGGG
CATCGCTTAG GCGAAGGTTC GGTTGAGCAC GCCCGCATTG CCGCGCACAC AGGCATTATG
GCCGGCGTGG CGTTAGCCAG CTGTACAGCC ATTTTCACCA CGCTACTGCG TGAACCTATC
GCCCTGCTCT ACAATCAGGA CCCGCTGGTT GTCGCGATGG CGTCTCAGCT CATGCTGCTG
GCTGCCGTTT ATCAAATCTC CGATGCCGTT CAGGCCATCG GCAGTGGCGT GTTACGCGGC
TATAAAGATA CCCGGTCGAT TTTCTATATT ACGTTCACCG CTTACTGGGT GCTGGGATTG
CCGAGCGGCT ACCTGCTGGC GTTGACGGAT ATCATCGTCC CACGCATGGG GCCGGCGGGT
TTCTGGTGTG GTTTCATCAT TGGCCTGACG GCAGCAGCAG TGATGATGGT GACGCGGATT
CGTTTTCTCC AGCGCCAGCC TGCCGCACGG ATTTTAGCGC GCGCCGCCCG CTAG
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| Protein sequence | MQQYLTEARK LSALAVPVII AQVSQTSMGV VDTVMAGAYS ATDMAAVAVG TSIWLPAILF
GHGLLLALTP VVAQLNGSGR RDRISHQVRQ SFFLAAIISV FTMLALYQGE YAINLMSDDS
PELAAKAIGY LHALLWGVPG YLFYQVLRCQ CEGLSKTYPG MMIGFIGLLI NIPINYVFIH
GKFGMPELGG VGCGVATASV YWIMMLLMMF YTRHASWLRD IRLHRPAFRL DGAVLKRLFG
LGLPIALALL FEVTLFAVVA LLVLPLGVVD VAGHQIALNF SSLMFVLPLS VGVATTIRVG
HRLGEGSVEH ARIAAHTGIM AGVALASCTA IFTTLLREPI ALLYNQDPLV VAMASQLMLL
AAVYQISDAV QAIGSGVLRG YKDTRSIFYI TFTAYWVLGL PSGYLLALTD IIVPRMGPAG
FWCGFIIGLT AAAVMMVTRI RFLQRQPAAR ILARAAR
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