| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2204 |
|---|
| Symbol | |
|---|
| ID | 8133148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 2533961 |
|---|
| End bp | 2534506 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644865492 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003017779 |
|---|
| Protein GI | 253688589 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATATGT CTACCCTGAA ACACATCGAA CCGACCCCTT CGCTTTACCC GGCGCTCGCT
GTCGATTGGG AACAGGTGTT TCGTCAACAC GGAAAGAAAT TGCATAACTT CATCCGCAAG
CGCGTCAGCA ACCATGACGA CGTTGAGGAT TTACAGCAAA TGACCTACCT GGAAGTGCTC
AAACATCAGG ATAAATTTGC GGGAGCATCG CGGCCGGAGA CGTGGGTATT TGGTATTGCC
CTCAATCTGG TTCGCAACTA TTTCAAGCAG GCACGGCAGC GCGCTCAGGA AATGGGTGAT
GAGATGCTGG AGCATATTGC GATAGATCTC GATCCCGGCG CGATCGCTGA AAGCCAGCGG
GCATTGAAAC GCGCAATGGA TGCCATCGTC TCACTGCCTG AGGATACCCG TCAGATGCTG
ATGCAGTTGC TGGATACCGA TGCCAGTTAT CAGGATCTTG CGTTGCAGTT GGAGATCCCC
ATCGGTACGG TGCGGTCACG GCTGTCTCGT GCCCGAGGGG TGATCCGTCA GGCCGTTGAG
TCCTGA
|
|---|
| Protein sequence | MDMSTLKHIE PTPSLYPALA VDWEQVFRQH GKKLHNFIRK RVSNHDDVED LQQMTYLEVL
KHQDKFAGAS RPETWVFGIA LNLVRNYFKQ ARQRAQEMGD EMLEHIAIDL DPGAIAESQR
ALKRAMDAIV SLPEDTRQML MQLLDTDASY QDLALQLEIP IGTVRSRLSR ARGVIRQAVE
S
|
|---|
| |