| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2188 |
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| Symbol | |
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| ID | 8133132 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2518230 |
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| End bp | 2520200 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644865476 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_003017763 |
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| Protein GI | 253688573 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.33539 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAACA GTACAGGATT ACAGTTCACC GTTAAGGTCG GTGCCCTGGC GGCAGGCACT
TTTGCAGTGG TGGATTTCAG GCTGGATGAA GGATTGAACC GGCCTTTCAG CCTGTCGCTA
AGTCTGGCGA GCGCACAGCC GGATGTGGAT TTCGGCGCGG TGCTGGACCA GCCGTGCGAG
CTGATGATTT GGTATGAAGG CGAGCTGAAG CGCCGGGTCA GCGGGATTGT CAGTGGCTTC
ACGCAGGGCG ACACCGGTTT TCGGCGCACG CGCTATCAGA TAGACGTCCG TCCGGCGCTG
TGGCGACTGG GGCTGCGCAC CAATGCTCGT ATTTTTCAGG CACAGACGCC GGATGCGATT
ATCAGCATGC TGCTGGAAGA GGCTGGAATC ACTGACTACG CCTTTGCGCT GCGCAATGAG
CACGCAGTGC GGGAATATTG CGTGCAGTAC CGGGAAAGCG ATTTGGCGTT TGTCACCCGT
CTGGCCGCCG AGGAGGGCAT GTATTTCTTC CACGAATACG AAGAGGGTAA ACACCGGGTG
GTGTTTGCCG ACGACGCCGG GGCGCTGACC AAAGGCCCGG AGCTGTTCTT CAATCTGGCG
ACACAAGGGC TGAGCGAGGG GGAATACATT CGGCGCTTCC ACTACGCAGA GCGGGTGAGC
ACTGCCGAAG TCGAGTTGAA AGACTACAGC TTCAAAACGC CGGCTTACGG GCTGTCACAC
AAGAAGATGA GCGGTGAACT TGAGCACCAG CGTGAAAGCT ACCAGCATTA CGATTATCCG
GGGCGCTATA AGCAAGACCC GAGCGGCAAG GCGTTCAGCG GCTACCGGCT GGATGCGCTG
CGGTCAGGGG CGGTGACGGG CGAAGGGGAA TCCAACTGTG CGGGGCTGAT GCCGGGCAGT
ACGTTTACCC TGACGGAGCA TCCGAATACG ACGCTGAATG CGGTCTGGCA GACGGTGAGC
GTGACGCACG TCGGGCAACA GCCGCAGGCG CTGGAAGAGG AAAGCGGTGG TGAACCGACC
ACGATGAGTA ACAGTTTTGC GGTGGTGAAA GGGACAACAA CGTGGCGCAC CGCGATGCCG
TATAAACCGA TGGTGGACGG CCCGCAAATC GCCACTGTTG TCGGTCCGGC TGGGGAAGAA
ATCTACTGTG ACCCGTATGG TCGGGTGAAA CTGCAATTCC CGTGGGACAG ATACGGCGCC
AGTAACGACC AGAGCTCCTG CTGGGTGCGC GTCAGTCAGG GCTGGGCGGG CGGTCAGTAC
GGCATGATTG CTATCCCCCG TATCGGCCAT GAAGTGATCG TCAGCTTCCT GGAGGGCGAT
CCGGATCAGC CGATTGTCAC CGGGCGGACG TTCCACGTCA CTAATCCGTC TCCCTATCCG
CTGCCTGCCA ACAAAACACG GACCACGCTT CGTTCCAAAA CCCATAAAGG CAAAGGCTTT
AACGAACTCA GCTTCGAGGA TGCGACCGAC AACGAAGAGA TCTTCCTTCA TGCCCAGAAG
AATATGGCTG TGCGGGTACT GAATTCCAAA GATGAGCGCG TGGACTATAA CCGCACGACG
AGCATCGGAC ATGATGAAGA ACTGGTGGTC GCCAACAATC GTAAAATCAC GGTGGAAGGC
AATCAGGATC ACAAAACCAC CGGCAACCAT TTATCGCTGA CCGAAGGCGA TAGCGGCATA
CAGGTTAAGG GCGATCTGAC GCAGAAAATC AACGGAGTAT TCAGCGTAGA CAGCAACGGC
GATCTGACGC TGCAAAGCGG CAGCAAACTG ACGCTCCGCG TCGGAAGCAG CTTTGTGGTA
ATCCACGCTG GTGGAGTGGA CATCAAAGGG CCAGCCATCA ACCTGAATTC AGGCGGCAGT
CCGGGCGATG TTGCCCTCCC TGCTGACCCG GCGATATTGA AAGCAGCGGC GGCCGCAGGG
ACGATGTTTG TGGCGCACTG TCCGGCAAAG GAGAAAGAAA ACAGTGAGTG A
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| Protein sequence | MANSTGLQFT VKVGALAAGT FAVVDFRLDE GLNRPFSLSL SLASAQPDVD FGAVLDQPCE
LMIWYEGELK RRVSGIVSGF TQGDTGFRRT RYQIDVRPAL WRLGLRTNAR IFQAQTPDAI
ISMLLEEAGI TDYAFALRNE HAVREYCVQY RESDLAFVTR LAAEEGMYFF HEYEEGKHRV
VFADDAGALT KGPELFFNLA TQGLSEGEYI RRFHYAERVS TAEVELKDYS FKTPAYGLSH
KKMSGELEHQ RESYQHYDYP GRYKQDPSGK AFSGYRLDAL RSGAVTGEGE SNCAGLMPGS
TFTLTEHPNT TLNAVWQTVS VTHVGQQPQA LEEESGGEPT TMSNSFAVVK GTTTWRTAMP
YKPMVDGPQI ATVVGPAGEE IYCDPYGRVK LQFPWDRYGA SNDQSSCWVR VSQGWAGGQY
GMIAIPRIGH EVIVSFLEGD PDQPIVTGRT FHVTNPSPYP LPANKTRTTL RSKTHKGKGF
NELSFEDATD NEEIFLHAQK NMAVRVLNSK DERVDYNRTT SIGHDEELVV ANNRKITVEG
NQDHKTTGNH LSLTEGDSGI QVKGDLTQKI NGVFSVDSNG DLTLQSGSKL TLRVGSSFVV
IHAGGVDIKG PAINLNSGGS PGDVALPADP AILKAAAAAG TMFVAHCPAK EKENSE
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