Gene PC1_2179 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_2179 
Symbol 
ID8133123 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp2506502 
End bp2507167 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content55% 
IMG OID644865467 
Producttranscriptional regulator, GntR family 
Protein accessionYP_003017754 
Protein GI253688564 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAATTATC CAATCGGGCA GATCAATCAC AGCTATCTGG GCTCCAGCGT TTATACCATG 
CTGCGCGAAG CGTTAATTAC CGGCCAACTC AAACCGGACG ACCGCCTGAG AATACGGGAG 
CTTGCCGCAC AGGTGGGTAC CAGCGTCACG CCAGTGCGAG ATGCGATCCT GCAATTGGCG 
AAAGAACAGG CGCTGGTGCT CAAAACGCCG CGTGATATCC GTGTTCCCCA GTTGACCGAA 
GCGCAATTTA TCGAGATCCG CACATTGCGG CTGGCGCTGG AAGGCACGGG GGCCGAGCAG 
GCTGCCGCAC ACATTACGCC GAAGATGCTG GAGCAGATTG AAGAGAATAT TCGCCAGAAT 
CGTCTGGCGA TTGACGAGAA AAATCTACGC GAAGCGCTGC GATTAAATAG TGAGTTTCAC 
CTGTTTCTGG CGCAGGCGGC GCGTATGCCG CTGTTGACGC AGTTTATCGG CAGCTTGTGG 
ATGCGCACCG GCCCGCTGAT TGCACAGGCC TATGCGCATT TTTCCGTGCA GATGGCGATC 
GAACATCATG AAGATGTCCT TGCCGCGCTA CAACAGCGCG ATGCCAGCAG CGCCCGACAG 
GCCATTCAAT CCGACATTCT GGATGGCAGC GAAACAATGC TGGCTTTTAT TGCGATAGAA 
CAATAG
 
Protein sequence
MNYPIGQINH SYLGSSVYTM LREALITGQL KPDDRLRIRE LAAQVGTSVT PVRDAILQLA 
KEQALVLKTP RDIRVPQLTE AQFIEIRTLR LALEGTGAEQ AAAHITPKML EQIEENIRQN 
RLAIDEKNLR EALRLNSEFH LFLAQAARMP LLTQFIGSLW MRTGPLIAQA YAHFSVQMAI 
EHHEDVLAAL QQRDASSARQ AIQSDILDGS ETMLAFIAIE Q