| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2178 |
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| Symbol | |
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| ID | 8133122 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2504502 |
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| End bp | 2506166 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644865466 |
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| Product | Polypeptide-transport-associated domain protein ShlB-type |
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| Protein accession | YP_003017753 |
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| Protein GI | 253688563 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2831] Hemolysin activation/secretion protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTGGTT TTTTCAGGCT GATTGCTATC ATGCCTGCGC TATTTTCTTA TACCGTATTT
TCCGCGCCGC TTAATCCGGC AGACCGAAAT GACATTCAGC AGCGCCAGGC CGAGGTGATC
GATCAATCCC GGCAGCAGCG CGATTCCTTA TTGCAATTAA ATCAGCCACA AACGACGGTG
AATCCCACAG GCGGAAGTAA TGCCGGACAC TGTTTTTTCA TTAAAGATAT TCATTATCAC
AATAGCTCGC TGCTGCGTGA AAGAGATAAA AACAGGTTAA ATAAAGATTA TATTAATCGT
TGCCTTAATG TTAATGATAT AAATCAGCTG ATTCATGACG TCAGTAATTG GTATATCGAA
CGGGGTTATA TCACCAGTCG CGCTTTTATT GCTGAGCAGG ATCTTTCTGG CGGCGTATTG
CAGATCGATA TTCTGGAAGG GCGCCTCGAA TCTATTAATC TTAATAACCA ATCAACGTGG
GCATTAAAAC AGGTTTTCCC AGGCCTGGAA GGCGAAATTC TCAATCTCCG GGATATCGAA
CAGGGCATGG AACAGCTCAA CCGCATGCCG ACGCAGCAGG TGAGCATCGA AATTCAGCCC
GGCAACCAGC CCGGTTATTC CATCGTCAAT CTGACCAGTA AAAAGCAAAT TCCGCTGACG
GCAAATATCA GTTTCGATAA TAGCGGGCAG AAAAGCACCG GGGAACGGCA GCTAAACGGC
GGCCTGTGGG CGAATAACGT GCTGGGGCTG GCCGACCAGT GGTTTATCAA CGGTGGACAC
AGTAGCGAAT TTCGCGATAG CCGCAATGCC GAAAGCCTGC AAGCGGGCGT CTCGCTGCCT
TACGGCTACT GGACGCTCAG CTACGACTAT TCTCAAAGCC GTTACCGTAA CGATTTCATC
AACCGGGATT TTCTCTGGCA TTCAACGGGT GATAGTCAGA CGCACCGCGC CACGCTGTCA
CGCGTGATAT TCCGCAACGG TGACATGAAA ACCAGCCTCT CGGCGGGCAT GTCGCACCGT
ATCGGGCAGA ACTACCTGAA CGATGTTCTG CTGCAATCCA GCAGTCGTAA ACTCAGCAGC
GCGATTATCG GCATCAATCA CAGCCAGAAA CTGTGGGGCG GGCTGGCGAC GCTCAACCCC
GCTTATAGCC GGGGAACTCG TTGGTTCGGC GCAGAAAGCG ATGAAGGGAA ATCTGATGAT
GCGCTGCGTG CCGAATTCAA CAAAGTGACG CTGGCGGCCA GTTATTACTA CCCGATCGCT
GACAACCTCC ATTACCTCAC CAACCTCTAT GGTCAGTATT CACCGCAGCG CCTGTATGGC
AGTGAACAGG TCACGCTGGG TGGGGAAACT TCCGTACGGG GCTTCAAAGA GCAGTATCTC
TCAGGCAATC GCGGTGGTTA CTGGCGCAAC GAGCTCAACT GGCGGGCGGC ACAGTTGCTG
CTGTTGGGCA GCGTTACCCT GACGGCGGCG GTGGACGGCG GGCATCTTTT CTCACAGAAA
GCTGAAAGCG AATCGGCGGG TACGCTGTGG GGCGCGGCGG TAGGGGCTGG CGTCGCGAAT
CAATATCTCT CACAACAAAT CACGGTTGGC TGGCCGTTGG CACACCCCGA CTGGCTAAAA
CCGGATAGCA CCGTGGTGTA TTACCGCGTT GGGCTGTCGT TTTAA
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| Protein sequence | MRGFFRLIAI MPALFSYTVF SAPLNPADRN DIQQRQAEVI DQSRQQRDSL LQLNQPQTTV
NPTGGSNAGH CFFIKDIHYH NSSLLRERDK NRLNKDYINR CLNVNDINQL IHDVSNWYIE
RGYITSRAFI AEQDLSGGVL QIDILEGRLE SINLNNQSTW ALKQVFPGLE GEILNLRDIE
QGMEQLNRMP TQQVSIEIQP GNQPGYSIVN LTSKKQIPLT ANISFDNSGQ KSTGERQLNG
GLWANNVLGL ADQWFINGGH SSEFRDSRNA ESLQAGVSLP YGYWTLSYDY SQSRYRNDFI
NRDFLWHSTG DSQTHRATLS RVIFRNGDMK TSLSAGMSHR IGQNYLNDVL LQSSSRKLSS
AIIGINHSQK LWGGLATLNP AYSRGTRWFG AESDEGKSDD ALRAEFNKVT LAASYYYPIA
DNLHYLTNLY GQYSPQRLYG SEQVTLGGET SVRGFKEQYL SGNRGGYWRN ELNWRAAQLL
LLGSVTLTAA VDGGHLFSQK AESESAGTLW GAAVGAGVAN QYLSQQITVG WPLAHPDWLK
PDSTVVYYRV GLSF
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