| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2177 |
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| Symbol | |
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| ID | 8133121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2499259 |
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| End bp | 2504451 |
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| Gene Length | 5193 bp |
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| Protein Length | 1730 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644865465 |
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| Product | filamentous hemagglutinin family outer membrane protein |
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| Protein accession | YP_003017752 |
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| Protein GI | 253688562 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01731] adhesin HecA family 20-residue repeat (two copies)
[TIGR01901] filamentous haemagglutinin family N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCAG TAAAAACCAC ACAGCGCCTG CTGGCGTACA CGCTGATCCA CCTGATTGCG
TTTCAGCCGC TGCTGCCGGC CATGGCGGCG GGCGTACAGG TCGCGACGGG CAACACCGCG
CTGGATCAGG CCGGTAACGG CGTCCCGGTC ATCAATATCG CCACGCCAAA CAGCGCGGGA
ATATCCCACA ACCAGTACCA GGATTTTAAC GTTGATAAAC CCGGCCTGAT CCTGAATAAC
GGCACGGCGC AGCTCAATCC CACCCAGCTT GGCGGGCTGA TCCAGAACAA CCCTAACCTG
AAAGGCAAGG CCGCCGATGC CATTATTAAC GAAGTGGTGT CGACCAACCG CAGTACGCTG
GCGGGGTATC TGGAAGTGGG GGGCAAACAG GCCAGCGTCA TCGTGGCCAA CCCGAACGGC
ATTACCTGCG ACGGCTGCGG TTTTATCAAT ACCCCGCAGG TGACGCTGAC TACCGGCAAA
CCCCAGCTGG ATGCGCAGGG GAACCTGCAG CATATCGACG TGACCCGCGG TGATATCACG
CTGACCGGGC AGGGGCTGGA TGCAAGTAAA AGTGACTACC TCAGCCTGAT TGCCCGTACC
GCGCAGATTA ACGCCGGGCT GAATGCCAAT GACACGCAGA TTGTGCTGGG GGCTAATCAG
GTTGATGCAA CAGGCAAGGT GACGGCGCAG GCAGCGGACA GCGGTGTGAA GGTTGCACTG
GATACGGGCG CGCTGGGTGG CATGTACACC AACCGCATCA GGCTGGTTTC CAGCGATAAG
GGCGTGGGCG TCAACGTCGG CAACCTGAGT GCGCGTAGCG GGGATATCAC GCTGTCGGCC
AACGGCAAGC TCAGCCTCGG TGATACGGTG GCGCAGGGGA ATATTCAGGC TGACGCGGAT
GCGCTGGCGC TGCGGGGCAA GCAGCAGGCG GGTGACGCAC TGATGCTGAG CGCGAAGCAG
GACATCACGC TGCAGGACGC CACGCTGCGT GCCGGGCAGG ATATCGCTCT CCGGTCAGAC
GGGACGCTGA AGGCACAAAA CAGCGTCATC AGCGCGGGCG TTGATGCGCA GGGCATCGTC
AAGTCCGCCA ATCAGTTATC CCTTATCGGT GACGCTGTCA CGCTTGAGGC TACCCAGCTT
GCCGCCGGCA AGGTGACGGT CAACGCGGGC CAGTCGCTGC AGCAGGATGC GGCAAGTGGT
ATCAAAGCGG AGTCGGTGCT CGATATACGC GGCGACGCGG TGTCGCTGGC GGGCAGCGCG
GGGGGTGAAG ACGTACGACT GGCGGCGAAG ACCCTTACCG GTGCCGGCAG CGCACAGCTT
CAGGCGAAGA ATAATGCCAT GGTGCGCGTT ACGCAGCAGG GCGACTGGCA GGGAAACCTG
ACCGCCGGTA ATGTGCTCAC CGTTGACGGC GGACGTCTGG TGCAGCGTGG CACGCTGGCG
GGGAAAACCC TCACGCTGAC GCTGGATGCG CTGGATAATC AGGGCGATAT CGCCGCGCGG
CAGGGGCTGA CGTTCAGCGG CGGCGACATG ACGAACCGCG GTACGCTGGC GGCGGCCGAG
CGCCTGACGG TTAACGCGCA GCGTCTGGAC AACCTCGGTT TACTCAGCGC TCGCCATGAC
GTGACGCTTG AGCTGCAAAC GGTGCTGAAC AATCAGGGCA ATATTCTGAC GGATAATCAG
CTGTTTTTGC TGGCCGACAC CATCACCAAC GGTGGCACAC TGCAGGCCGA CAACGCACTG
CAGCTTGAGG CCACGCGCGC CCTGACGCAA TCCGCGACCG GCTCACTGCT GGCTGGCACG
GACCTGACGG TAAACGCCGG ACAGGCCGAG ACCGACGGTG CCATTCAGGC GCAGCAATTC
CTGCTGAATG CCGCACGCTG GCTGAATTCG GGCAAAACCA GTCTTACCGG CGACGGACAG
ATTACGGCCG CCCATCTGGA TAACCGCGGC AGCCTGTTGA CGGCGGGCAA CTGGACCATT
CACAGCGATG TTGTCAGCCA GGCCGGGACG TTGCAGGGAA ATGCTCTGAC CCTTCAGGCC
AATACTCTTA CGAGCAGCGG ACAGGCACAG GCGCAGGGCG CGGTGAACCT GACCGTCGCC
GATGCCTTTA CCAATAGTGG CGACTGGCTC AGCGGAGAGT CGCTGCGTCT TCAGGCGGCG
AAGACCGAGA ACCGGGGCAC GCTGCAGGCG CTAACCCTGA CGGCGGAGGG TTCGTCTTTC
GACAACCGTG GCACGATTAG CGGTATCACT AACCTGTCGC TCTTCCTGAA CGGCAATCTG
GCTAACAGTG GCACGCTGCA GGGCAATCAG CTTCATGCGG AGGCGGCACA GCTGACCAAT
CAGGGCACGC TTCACGGCGC CGACGCACTG ACGCTGTCCA TCACCGGCAA TCTGACTAAT
CAGGGAACAC TGCTGAGTGA CGGTGACAGC ACCACCACGG CTAAACTGTT CGATAATCAG
GGTACGTTGC AGGCGAAAAA CGTCACGCTG CAGGTGGATG AACTGGATAA TGCGGGGAAC
ATCTTCGGTG TGTCCTCACT GGTGCTGACG GCGGCCAGCG GGCTGACCAA CCGGGAAGCG
GGGAAACTGC TGTCTCAGGG CGCGGCGGTG CTCACCGCGG CGGAGGTGGT GAATACCGGA
GAGTGGCAGG CGAAAACGCT GACGCTGACG GCGAATAATC TCACCAATGA CGGCCAGATT
CAGGGCGATG ACGCCTTGTC TTTGACGCTG CCGATGACCG ACGGCAAAGG GACGTTAATC
AACCGCGGCA CGCTGACCAC GGGCGGTGAC GCCACGCTGT TTGCGCGCCT GATGGAGAAT
CCGGGCACGC TGTCTAGTCG GGGTCAGACG ACATTGACGG GCATGTCGCT GATGAACGAC
GGGAGAGTGG TTGCAGCGAC GGGACTGTCG CTGCGTGGCG ACTATCAGGG CCGTGGCCTG
CTGAATACCG CGGGCACCCT GACGCTGGAT GGCGACACGC TGGTTAACGG CGGGCACTGG
GAAAGCCGGG CGTTGTCCCT GCAAGGGAAG CACTTGACCA ATCAGGGCAC GGTGCTGGGG
GACATGGTCG CGCTTTCTGT GGATCGTCTG GTTAACCACG GTGACATCAC CGGTGTTGAC
ACGCTAACGC TGTCGCTTGG TGACAGCCTG AATAATATCG GCACGTTGCG CAGCGACAGC
CTGTCGGTTG CGGCGGTGGA GGTGAACAAC CGCGGTGACA TGCAGGGCAT CAATACCCTG
CAACTGAACA CCACCGGACT GCTGGATAAC ACGGGCGTCA TCAGCGGCAG CCAGTCTGTG
GCGGTGACAG CCGGTGACGT CAGACAGGGC GGTACGCTGG AAGGGAAACG CGTCACGCTG
GACGCCGCCT CGCTGGTCAA TCAGGGCAAA ATGCTGGGCG TGGACGCGCT GACGCTGTCG
ATTGCCGGTA ATTTTTCCAA TGACGGCAAT CTGCTGACGC AGGGTAATGC AACGGTGACC
GCGCAGAGCA TGGATAACCA CGGGCTGATG CAGGCGGTAA ACCTCACGCT GGAAGCGGAT
GAGGTGACCA ATGCCGGGCA ACTGCTCGGT ATTCAGGCGC TGTCGGTAAC GGCACAGGGC
GGGCTGACCA ATCAACAAAG CGGCAAACTG CTCACACAGG GGGCGGCGGT GTTACAGGCC
GCCCAAGCGG AGAACCACGG CGAGTGGCTG GCGGATAATC TGACGCTGCA GACCGCCCGT
TTCGCTAACA CGGGACGGAT TCAGGCCGAT CGCGATCTTG ATATAACGGT CACGCCCGCA
AGTGCCGCAC GTCAGCGTTC ATTCCTGCCG ATGGCGCTGT CGCTGGCGGC AAATATTCAG
CAACTCAACG CGTCATCTTC ACGCCAGGGC GACGGAGCCA CAGTCGGTGT ACTGGACAAC
CGCGGCACGC TGGTGTCGGG CGGTGACCTG CAACTGCATG CCACGCAAAT CACCAATCAG
GGCTCGCTTT CCGGTAACGG CACGGCAACC CTGACGGGCA ACACGATCCA GAATGACGGT
GCCGTGGTCG CCCTGACATC CCTGTCGCTG AAGGGGAATT ATCAGGGTAG CGGGACGCTG
CAAACGGACG GGCGGCTGGA CTGGTCCGGT ACGACGCTCA CCAACCGCGG GCGCTGGCAG
GCGAACGCCA TTCAGTTGCA GGGAATAACG CTGGATAATC AGGGCACGCT GCTGGGGCAG
CGCACTGACA TCACGGCCGA TAGCCTGTTT AACGGCGGCG AAATCGCAGG GGTTGACGCA
CTGCAACTGA CCGTTGCCGA CCGTCTGACC AATCAGGGCC AGCTTTATGG CGCGACGCTG
GGGCTGTCGG CGACCGGCCT GTTCAATCAG GGCGAACTCT CCGGTGACGA CCTGAACCTG
ACGTTGCAGG AGGGGTTGCA CAACAGCGGT CTGATTAGCG GCAGCCAGCG GGTACAGCTG
GAGGCGGAGC AGGTCGCACA GTCGGGTTCA CTGGAAAGTC GCCAGTTGCA GGTGCAGGCG
AACGCACTGG ACAATCAGGG CACGATGCTG GGCATGGATG CACTGACGCT GGCGATTAAC
ACCACGGCGC GCAACAGCGG GAAGTGGCTG AGTCAGGGCG ACAGCACGCT GACTGCCAGC
CGACTGGAAA ACCGTGGGCA ATGGCAGGCG AAGACGCTGA CGCTGACGGC CGATGACGTC
GAGAATGCCG GACAACTGCT GGGGCTGTCA TCGCTGTCGC TGACGGCGAA AAACAAGCTA
AGCAACGCGC AGACTGGCAC ATTGCTTACC CAGGGACTCG CGGTATTGCG CGCGGCCAGT
GCCGACAATG ACGGTGAATG GCAGGCGGAC AGCCTGACGC TGGACGCACA AAACCTGAAC
AACCGTGGGC ACATTCAGGG TGATACATCG CTGAAGGCGA CGCTGGCAAA CGGCGACGTC
ACCAATCAGG GCACACTGTG GAGCAAGAGT GCCGATATTG CAGCCCGTAC GCTGACCAAT
GCGGGTGAGA TCACCGGCGT GAACGGTCTT CAACTGACAC TGGATGACGC CTTAACCAAT
CAGGGCGCAC TGAGCAGCTA TCACCTGACC GCACAGGCAG GCAGCCTCGA CAATAGCGGC
ACAATCACCG GCCTTGACCG GCTCGAACTG ACCGTTGGCA ATAGCCTTGA TAATCAGGGC
ACGCTGTACG GCGCGGCGCG GCGCTGGCGC TGA
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| Protein sequence | MKPVKTTQRL LAYTLIHLIA FQPLLPAMAA GVQVATGNTA LDQAGNGVPV INIATPNSAG
ISHNQYQDFN VDKPGLILNN GTAQLNPTQL GGLIQNNPNL KGKAADAIIN EVVSTNRSTL
AGYLEVGGKQ ASVIVANPNG ITCDGCGFIN TPQVTLTTGK PQLDAQGNLQ HIDVTRGDIT
LTGQGLDASK SDYLSLIART AQINAGLNAN DTQIVLGANQ VDATGKVTAQ AADSGVKVAL
DTGALGGMYT NRIRLVSSDK GVGVNVGNLS ARSGDITLSA NGKLSLGDTV AQGNIQADAD
ALALRGKQQA GDALMLSAKQ DITLQDATLR AGQDIALRSD GTLKAQNSVI SAGVDAQGIV
KSANQLSLIG DAVTLEATQL AAGKVTVNAG QSLQQDAASG IKAESVLDIR GDAVSLAGSA
GGEDVRLAAK TLTGAGSAQL QAKNNAMVRV TQQGDWQGNL TAGNVLTVDG GRLVQRGTLA
GKTLTLTLDA LDNQGDIAAR QGLTFSGGDM TNRGTLAAAE RLTVNAQRLD NLGLLSARHD
VTLELQTVLN NQGNILTDNQ LFLLADTITN GGTLQADNAL QLEATRALTQ SATGSLLAGT
DLTVNAGQAE TDGAIQAQQF LLNAARWLNS GKTSLTGDGQ ITAAHLDNRG SLLTAGNWTI
HSDVVSQAGT LQGNALTLQA NTLTSSGQAQ AQGAVNLTVA DAFTNSGDWL SGESLRLQAA
KTENRGTLQA LTLTAEGSSF DNRGTISGIT NLSLFLNGNL ANSGTLQGNQ LHAEAAQLTN
QGTLHGADAL TLSITGNLTN QGTLLSDGDS TTTAKLFDNQ GTLQAKNVTL QVDELDNAGN
IFGVSSLVLT AASGLTNREA GKLLSQGAAV LTAAEVVNTG EWQAKTLTLT ANNLTNDGQI
QGDDALSLTL PMTDGKGTLI NRGTLTTGGD ATLFARLMEN PGTLSSRGQT TLTGMSLMND
GRVVAATGLS LRGDYQGRGL LNTAGTLTLD GDTLVNGGHW ESRALSLQGK HLTNQGTVLG
DMVALSVDRL VNHGDITGVD TLTLSLGDSL NNIGTLRSDS LSVAAVEVNN RGDMQGINTL
QLNTTGLLDN TGVISGSQSV AVTAGDVRQG GTLEGKRVTL DAASLVNQGK MLGVDALTLS
IAGNFSNDGN LLTQGNATVT AQSMDNHGLM QAVNLTLEAD EVTNAGQLLG IQALSVTAQG
GLTNQQSGKL LTQGAAVLQA AQAENHGEWL ADNLTLQTAR FANTGRIQAD RDLDITVTPA
SAARQRSFLP MALSLAANIQ QLNASSSRQG DGATVGVLDN RGTLVSGGDL QLHATQITNQ
GSLSGNGTAT LTGNTIQNDG AVVALTSLSL KGNYQGSGTL QTDGRLDWSG TTLTNRGRWQ
ANAIQLQGIT LDNQGTLLGQ RTDITADSLF NGGEIAGVDA LQLTVADRLT NQGQLYGATL
GLSATGLFNQ GELSGDDLNL TLQEGLHNSG LISGSQRVQL EAEQVAQSGS LESRQLQVQA
NALDNQGTML GMDALTLAIN TTARNSGKWL SQGDSTLTAS RLENRGQWQA KTLTLTADDV
ENAGQLLGLS SLSLTAKNKL SNAQTGTLLT QGLAVLRAAS ADNDGEWQAD SLTLDAQNLN
NRGHIQGDTS LKATLANGDV TNQGTLWSKS ADIAARTLTN AGEITGVNGL QLTLDDALTN
QGALSSYHLT AQAGSLDNSG TITGLDRLEL TVGNSLDNQG TLYGAARRWR
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