Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2117 |
Symbol | ipk |
ID | 8133061 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2421577 |
End bp | 2422449 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644865406 |
Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
Protein accession | YP_003017693 |
Protein GI | 253688503 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.825247 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAACCGA CGGTTATCGA GACATGGCCA GCACCCGCCA AACTGAATTT GTTTCTCTAT ATTACTGGTC AGAGACAGGA CGGGTATCAC CTGCTGCAAA CGCTATTCCA ATTTCTGGAT TACGGTGACA CCCTGACGAT TCAGCCACGT GATGACGACC AGATTAACCT GCTGACCCCC GTGGACGGCG TAGAGAACGA GCAAAACCTG ATCGTCCGCG CCGCACGCTT ATTACAGCAG CACTGTAAAC GTCATAATAT TCACCCTGCC CAGTTCGGTG CAGATATCCG TATCGATAAA TATCTGCCCA TGGGCGGCGG GCTGGGCGGT GGTTCATCCA ATGCAGCTAC CGTTTTGGTC GCTCTTAATC ATTTATGGAA AAGCGGGCTG AGCGTTGATA CGTTGGCCGA TCTGGGGTTG CAATTAGGTG CGGATGTTCC CGTCTTTGTT CGTGGGCATG CCGCCTTTGC CGAAGGCATT GGTGAGCGGT TAACACCAGC AAATCCGCCA GAGAAATGGT ATCTGGTGGC TCACCCTGGC GTGAGTATCG CTACCCCGCT GATTTTCGGC GATCCGGAGT TGACGCGTAA TTCACCAGTT CGTGATTTAG AAACTTTATT AAACCAGACC TTCGTCAATG ATTGTGAAGC TATCGCAAGA AAACGTTTTC GTGAGGTTGA ACAGCTACTT TCATGGCTGC TAGAATATGC CCCGGCGCGC CTGACTGGAA CGGGAGCTTG TGTGTTTGCA GAGTTTGACA CCGAGTTCGC AGCCCGTCAG GTGCTTGACC AGGCCCCGGA ATGGCTAAAC GGTTTCGTCG CGCGAGGCGT TAACGTCTCT CCGCTACAAC GTACGCTTTC CGGGCAACTT TAG
|
Protein sequence | MQPTVIETWP APAKLNLFLY ITGQRQDGYH LLQTLFQFLD YGDTLTIQPR DDDQINLLTP VDGVENEQNL IVRAARLLQQ HCKRHNIHPA QFGADIRIDK YLPMGGGLGG GSSNAATVLV ALNHLWKSGL SVDTLADLGL QLGADVPVFV RGHAAFAEGI GERLTPANPP EKWYLVAHPG VSIATPLIFG DPELTRNSPV RDLETLLNQT FVNDCEAIAR KRFREVEQLL SWLLEYAPAR LTGTGACVFA EFDTEFAARQ VLDQAPEWLN GFVARGVNVS PLQRTLSGQL
|
| |