Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2097 |
Symbol | |
ID | 8133041 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2400118 |
End bp | 2400834 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644865386 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_003017673 |
Protein GI | 253688483 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.434652 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCGCG TGTTGATTAC CGGTGCCAGC TCTGGAATCG GTCAGCAACT GGCACTGGAT TATGCCCGAG ACGGCTGGGA CGTCCTCGCC TGCGGGCGTG ACGAACAACG GCTCCATGCG TTGACTGTCG CCTTTCCAGC CATTCGTACA ATCGCATTTG ATATGACGAA CCTGGCTGAG ACGCAGCAGG CATTAGGCGG TGTTACCGCC GATCTAGTGA TTCTCTGCGC GGGGACCTGT GAATATCTGG ATAACGGCGT CGTTGAAGCA GAAAAAGTCA GTCGGGTGCT AACAACCAAC GTAATCGGCC CGGTGAATTG TCTGTCGGTA CTATTGCCAC AGCTTGCGAA CGGTAGCCAT CTGGCGTTGG TGGGATCGAC CGCCAGCCTT GTTGCACTGC CAAGAGCAGA AGCCTATGGC GCGTCAAAAG CGGCACTGGC CTATTTTGCC CGCAGTCTGT CGCTGGATTT GCAAACGCGT GATATCACCG TGTCGCTGAT CCTGCCCGGT TTTGTCGATA CGCCACTGAC TGCACGCAAT GACTTCCCGA TGCCGATGCT GATTTCTGTG TCACACGCTG CGGAGGCAAT TCGTCGCGGG CTGGCAAAGA GAAAACGCGA GATCGCCTTC CCTCTGCGCT TTGCGCTGTT GCTCAAATGC GTTTCTGTGC TTCCACAATC GTGGCAACGT TTCCTCACCA GCCGGTTAGT AAGGTAA
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Protein sequence | MKRVLITGAS SGIGQQLALD YARDGWDVLA CGRDEQRLHA LTVAFPAIRT IAFDMTNLAE TQQALGGVTA DLVILCAGTC EYLDNGVVEA EKVSRVLTTN VIGPVNCLSV LLPQLANGSH LALVGSTASL VALPRAEAYG ASKAALAYFA RSLSLDLQTR DITVSLILPG FVDTPLTARN DFPMPMLISV SHAAEAIRRG LAKRKREIAF PLRFALLLKC VSVLPQSWQR FLTSRLVR
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