| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2059 |
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| Symbol | |
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| ID | 8133003 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2363934 |
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| End bp | 2365421 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644865349 |
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| Product | Pyridoxal-dependent decarboxylase |
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| Protein accession | YP_003017636 |
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| Protein GI | 253688446 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00190827 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCAAT TAGTAGAAAC AGCAGTTAAC CCGATTTTGG CCTCTTCTGC GCAGAGTATC
GAAGCCTATC AGGAAGCGAT TACGCAGAGT AGCCAAGCCG TTATGCAGTG GCTGCAACAG
CCTGAGATGT ATCAGGGAAA AACCGTTGCT GAACTGCGTG AACGCATCAC GCTGGATTTT
AATCCTCAGG GCCTGGGCAA CCAGGCCGCT ATTGAGCGTG CAATTGAGTA CTTTTTGAAA
GACAGCCTGT CGGTGCATCA CCCACAGTGC GTCGCTCACC TGCACTGCCC GAGTCTGGTG
GTCAGCCAGG CGGCTGAAGT CTTGATTAAT GCCACCAACC AGAGCATGGA CTCCTGGGAT
CAAAGCCCGT CAGCGACCAT CATTGAGATG AAGCTGATTG AATGGCTGCG TACTCAGGTT
GGCTATCAAT CTGGCGACGC TGGCGTATTC ACTAGCGGCG GCACCCAGAG TAACCTGATG
GGGCTGATGC TGGCGCGTGA TGCTTTCTTT GCCCGTCAGG GACATTCGAT CCAGCAAGAT
GGATTAGTTG GTAACCTGAA GAAAATTAAA GTGTTCTGTT CTGAAAATGC CCATTTCTCG
GTGCAAAAGA ACATGGCTTT ACTGGGGCTG GGTTATCAAT GCGTGACGCT GGTGAAAACC
GACCGCTTCG CGCGGATGGA TCTGAACGAT TTAGCTGAGA AAGTGGCGCA GGCCAAGGCT
AACGGCGAGC AGATTCTGGC GATTGTCGCA ACGGCAGGAA CCACAGATGC GGGGGCGATC
GATCCTCTAC GGGCGATTGC GACACTGGCT GCGGAACATC AGATTTGGGT TCACGTCGAT
GCAGCCTGGG GCGGCGCTCT GCTGCTGTCT GAGAAGTATC GCGATTATCT CGACGGTATT
GAACTGGTGG ATTCCATTAC GTTGGATTTC CACAAGCAGT TCTTCCAGAC CATCAGCTGT
GGCGCATTCT TGCTGAAAGA AGCTCGCCAT TATGAGCTGA TGCGCTATCA GGCGGCTTAT
CTGAACTCTG AGTTTGATGA AGCACAGGGC GTTCCTAACC TGGTGTCGAA ATCACTACAG
ACGACGCGTC GTTTTGATGC GCTGAAACTG TGGATGGGTC TGGAAGCGTT AGGCCAACAG
CAGTACGCCG CGATCATCGA TCATGGCGTC ACGCTGGCAC AGCAGGTTGC ACAGTATGTC
GCTGAACACG CTTCGCTGGA GTTAGTGATG CAGCCACAGC TGGCGAGCGT ATTGTTCCGT
TTCCGTCCGC AACAGCTGGC GACAGCGAAT GATGCGACTA TCGCATTGCT TAACCAGCGC
ATTGGCGATG CTCTGTTGGA ATCGGGCCGC GCCAACGTAG GGGTAACCGA GTTTAATGGC
GTTACTTGTC TGAAGCTGAC GTTACTGAAC CCAACCGTTA CTCTGGACGA TGTTAAAGTC
CTGCTGGCGC TGGTTGAGAG CACCGCACAG CCGCTGTTGA CTGCGTAA
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| Protein sequence | MSQLVETAVN PILASSAQSI EAYQEAITQS SQAVMQWLQQ PEMYQGKTVA ELRERITLDF
NPQGLGNQAA IERAIEYFLK DSLSVHHPQC VAHLHCPSLV VSQAAEVLIN ATNQSMDSWD
QSPSATIIEM KLIEWLRTQV GYQSGDAGVF TSGGTQSNLM GLMLARDAFF ARQGHSIQQD
GLVGNLKKIK VFCSENAHFS VQKNMALLGL GYQCVTLVKT DRFARMDLND LAEKVAQAKA
NGEQILAIVA TAGTTDAGAI DPLRAIATLA AEHQIWVHVD AAWGGALLLS EKYRDYLDGI
ELVDSITLDF HKQFFQTISC GAFLLKEARH YELMRYQAAY LNSEFDEAQG VPNLVSKSLQ
TTRRFDALKL WMGLEALGQQ QYAAIIDHGV TLAQQVAQYV AEHASLELVM QPQLASVLFR
FRPQQLATAN DATIALLNQR IGDALLESGR ANVGVTEFNG VTCLKLTLLN PTVTLDDVKV
LLALVESTAQ PLLTA
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