| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2022 |
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| Symbol | rnfD |
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| ID | 8132966 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2322059 |
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| End bp | 2323114 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644865312 |
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| Product | electron transport complex protein RnfD |
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| Protein accession | YP_003017599 |
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| Protein GI | 253688409 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
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| TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTTTA GAATTGCGAG TTCACCGTTT ACACATAACC AACAGCGCAC ACAGCGCATC
ATGCTGTTGG TGATTCTGGC CTGTCTGCCC GGCATGCTGG CACAGGTTTA TTTCTTTGGT
TACGGCAACC TGATTCAGGT CGGGCTAGCG TCAGCCACGG CACTCATCGC AGAGGGCGTG
ACACTGTCAC TCAGAAAGTT TGCCGTACGT ACGACGCTGG CGGATAATTC TGCACTATTG
ACTGCCGTGC TGCTCGGCAT CAGCCTGCCG CCGCTTGCCC CCTGGTGGAT GGTGGTCATG
GCAACCGTCT TCGCTATCAT TATCGCCAAA CAGCTGTATG GCGGCTTAGG GCAAAACCCC
TTTAACCCCG CGATGATTGG CTATGTGGTG CTGCTGATCT CTTTCCCGGT GCAGATGACA
AGCTGGCTGC CACCTGTGCC ACTGCAAACC ATCCCCGTCG GTTTCCATGA TGCGTTAGTC
ATTATTTTTA CCGGACATAC GCCTGACGGA TACACCATGC AGCAGCTGAT GCATAACGTT
GACGGCATCA GTCAGGCTAC CCCACTGGAT ACGTTTAAAA CCAGTCTGCG ATCCGGCCAA
ACGCCGCAGA GCATTCTGCA ACAGCCGATG TTTGCGCAAT CGCTGTCTGG CATTGGCTGG
CAGTGGGTGA ATATCGGTTT TCTCATCGGC GGGCTGTTTT TGCTAATGCG CGGCACCATT
CGCTGGCATA TTCCGGTCAG TTTCCTGCTG TCACTGATGT TCTGCGCTTC GCTAAGCTGG
GTTATCGCAC CGGAGAAATT CGCTCCGCCG ATGCTGCATT TACTGTCCGG TGCCACCATG
CTCGGTGCCT TTTTCATTGC GACCGATCCC GTTACCGCCT CGACAACAAA CCGTGGCCGT
CTGATTTTTG GCGCGCTAAT TGGATTACTG GTCTGGTTGA TTCGAACTTA CGGTGGCTAT
CCGGACGGCG TCGCGTTTGC CGTTTTGCTG GCGAATATTA CCGTGCCGCT GATCGACTAT
TACACCAAGC CGCGCGCTTA CGGCCACCGT CGCTGA
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| Protein sequence | MAFRIASSPF THNQQRTQRI MLLVILACLP GMLAQVYFFG YGNLIQVGLA SATALIAEGV
TLSLRKFAVR TTLADNSALL TAVLLGISLP PLAPWWMVVM ATVFAIIIAK QLYGGLGQNP
FNPAMIGYVV LLISFPVQMT SWLPPVPLQT IPVGFHDALV IIFTGHTPDG YTMQQLMHNV
DGISQATPLD TFKTSLRSGQ TPQSILQQPM FAQSLSGIGW QWVNIGFLIG GLFLLMRGTI
RWHIPVSFLL SLMFCASLSW VIAPEKFAPP MLHLLSGATM LGAFFIATDP VTASTTNRGR
LIFGALIGLL VWLIRTYGGY PDGVAFAVLL ANITVPLIDY YTKPRAYGHR R
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