| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2015 |
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| Symbol | |
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| ID | 8132959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 2311047 |
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| End bp | 2313647 |
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| Gene Length | 2601 bp |
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| Protein Length | 866 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644865305 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_003017592 |
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| Protein GI | 253688402 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00844458 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTAAAG CTCTCGTTAT CGTCGAGTCC CCGGCAAAAG CCAAAACGAT CAATAAGTAT
TTAGGCAATG ACTACGTGGT GAAATCCAGC GTCGGTCATG TACGCGATTT GCCGACGAGT
GGCTCAGTCA GTAAAAAGAG CGCGGACTCA ACGACTAAAG ATAAAACGAA AAAGAAAGTC
AAAAAGGATG AAAAATCCGC GCTGGTTAAT CGTATGGGCG TCGACCCTTA CCATGGCTGG
CAAGCCAACT ACGAAATACT GCCGGGTAAG GAGAAGGTTG TCTCCGAATT AAAAACGCTG
GCGGAAAATG CCGACCACAT CTATCTCGCA ACCGACCTTG ACCGCGAAGG GGAAGCCATT
GCCTGGCACC TGCGGGAAAT CATTGGTGGT GAAGATGAGC GTTTCAGTCG CGTGGTGTTT
AACGAAATCA CGAAAAATGC CATTAAACAG GCGTTTGAAA AACCAGACAC GTTGAATATT
GACCGCGTTA ATGCACAGCA GGCACGTCGG TTTATGGATC GCGTGGTGGG TTACATGGTA
TCCCCGCTGC TGTGGAAAAA AATCGCCCGT GGCCTGTCCG CCGGACGCGT GCAGTCGGTT
GCGGTTCGCC TGATTGTCGA TCGCGAACGC GAGATCAAGG CGTTTGTGCC GGAAGAATAT
TGGGAACTGC ACGCCGATTT ACTGGCAGGC AGCGATATTC AACTGCAAAT GCAGGTAACG
CACCACAGCG GCAAGCCGTT TAAACCGGTT AATAAAGAAC AAACACAGGC TGCGGTTAGC
CTGCTTGAAA ACGCCCGCTA TGTGGTTGCC GATCGTGAAG ATAAACCGAC CAGCAGCAAA
CCGGGCGCGC CGTTCATTAC CTCAACGCTG CAACAGGCCG CCAGTACACG CCTTGGCTTT
GGCGTGAAAA AAACCATGAT GATGGCACAG CGTCTGTATG AAGCGGGCTA CATCACTTAC
ATGCGTACTG ACTCAACGAA CCTCAGTCAG GATGCCTTGA CGATGGTGCG TGGCTATATT
GGCGAAGAAT TCGGCAAGCG TTATCTGCCC GAATCCGCGA ATCTTTACAG CAGCAAAGAA
AACTCTCAGG AAGCGCACGA AGCGATTCGT CCTTCCGATG TTGGCGTGCT GGCCGACAGC
CTGAAAGATA TGGAAACCGA TGCGCAGAAG TTGTATCAGT TGATTTGGCG TCAGTTCGTC
GCCTGTCAAA TGACGCCTGC GCAATACGAC TCCACCACGT TAATCGTGGA AGCGGCCGAT
TATCAACTGC GTGCGAAAGG CCGTACGCTG CGTTTCGATG GTTGGACGAA AGTCATGCCT
GCGCTGCGTA AAAATGATGA AGACCGCACA TTGCCAACCG TGGCGGTGGG CGAAGCGCTG
TCACTGCAGA AACTGCTGCC AGGACAACAC TTCACTAAAC CGCCTGCGCG TTACAGCGAT
GCCTCACTGG TTAAAGAACT GGAAAAACGC GGTATTGGCC GTCCGTCTAC CTACGCGTCT
ATTATTTCAA CCATTCAGGA TCGCGGCTAT GTCCGAGTGG AGAACCGCCG TTTCTACGCC
GAGAAGATGG GCGAAATCGT TACCGATCGA CTGGAAGAAA ACTTCCGCGA ATTGATGAAT
TACGATTTCA CCGCGCGGAT GGAAAGCCGT CTCGATCAGG TTGCCAATAA TCAGGCGGAA
TGGAAAGCGG TGTTGGATGA GTTCTTCAAC GAATTCAGCC AGCAGTTGGA AAAGGCAGAG
CAGGATCCGG AAGAAGGCGG CATGCGCCCC AATGCGATGG TGTTGACCAG CATTGACTGT
CCGACGTGCT CTCGCCAAAT GGGGATTCGT ACCGCCAGTA CCGGGGTGTT CCTAGGCTGT
TCCGGTTATG CACTGTCGCC GAAAGAGCGC TGCAAAACCA CGATCAACCT GATACCGGAA
AACGAAGTGC TGAACGTGTT GGAAGGCGAT GATGCTGAAA CCAATGCGCT GCGTGCCCGT
CGTCGCTGTG AAAAATGTGG TACGGCGATG GACAGCTACC TGATTGATAA TCAGCGCAAG
CTGCACGTTT GCGGGAATAA CCCAGCCTGT GACGGGTATG AGATCGAAAC CGGCGAATTC
CGCATCAAAG GCTATGATGG CCCGATTGTT GAGTGCGAAA AGTGTGGTTC CGAGATGCAT
CTCAAAATGG GACGCTTCGG TAAATACATG GCGTGCACCA GCGAGACGTG CTCTAACACG
CGTAAGATCT TGCGTAATGG CGATGTTGCG CCACCGAAGG AAGATCCGGT GCCGTTGCCT
GAGCTGCCTT GCGAGAAGTC CGATGCTTAT TTCGTGTTGC GTGACGGTGC AGCAGGGGTG
TTCCTTGCCG CTAATACGTT CCCGAAATCT CGCGAAACGC GGGCACCGCT GGTAGAAGAA
TTAGTGCGCT TCAAGGATCG TCTGCCAGAA AAACTGCGCT ATTTGGCGGA AGCGCCAGTG
GTCGATAAAG ATGGCAACAA GACGCAGGTG CGTTTCAGCC GTAAGACCAA ACAGCAATAT
GTCTCGTCAG AAAAAGACGG CAAGGCAACG GGCTGGTCAG CGTTCTATAT CGATGGCAAA
TGGGTTGAAG GCAAGAAGTA A
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| Protein sequence | MGKALVIVES PAKAKTINKY LGNDYVVKSS VGHVRDLPTS GSVSKKSADS TTKDKTKKKV
KKDEKSALVN RMGVDPYHGW QANYEILPGK EKVVSELKTL AENADHIYLA TDLDREGEAI
AWHLREIIGG EDERFSRVVF NEITKNAIKQ AFEKPDTLNI DRVNAQQARR FMDRVVGYMV
SPLLWKKIAR GLSAGRVQSV AVRLIVDRER EIKAFVPEEY WELHADLLAG SDIQLQMQVT
HHSGKPFKPV NKEQTQAAVS LLENARYVVA DREDKPTSSK PGAPFITSTL QQAASTRLGF
GVKKTMMMAQ RLYEAGYITY MRTDSTNLSQ DALTMVRGYI GEEFGKRYLP ESANLYSSKE
NSQEAHEAIR PSDVGVLADS LKDMETDAQK LYQLIWRQFV ACQMTPAQYD STTLIVEAAD
YQLRAKGRTL RFDGWTKVMP ALRKNDEDRT LPTVAVGEAL SLQKLLPGQH FTKPPARYSD
ASLVKELEKR GIGRPSTYAS IISTIQDRGY VRVENRRFYA EKMGEIVTDR LEENFRELMN
YDFTARMESR LDQVANNQAE WKAVLDEFFN EFSQQLEKAE QDPEEGGMRP NAMVLTSIDC
PTCSRQMGIR TASTGVFLGC SGYALSPKER CKTTINLIPE NEVLNVLEGD DAETNALRAR
RRCEKCGTAM DSYLIDNQRK LHVCGNNPAC DGYEIETGEF RIKGYDGPIV ECEKCGSEMH
LKMGRFGKYM ACTSETCSNT RKILRNGDVA PPKEDPVPLP ELPCEKSDAY FVLRDGAAGV
FLAANTFPKS RETRAPLVEE LVRFKDRLPE KLRYLAEAPV VDKDGNKTQV RFSRKTKQQY
VSSEKDGKAT GWSAFYIDGK WVEGKK
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