| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2010 |
|---|
| Symbol | |
|---|
| ID | 8132954 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 2306577 |
|---|
| End bp | 2307461 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644865300 |
|---|
| Product | 23S rRNA pseudouridylate synthase B |
|---|
| Protein accession | YP_003017587 |
|---|
| Protein GI | 253688397 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.606088 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAA AGTTACAAAA AGTTCTGGCG CGCGCCGGAC ATGGCTCACG CCGCGAAATT
GAAGGTATCA TTCAGGCTGG ACGCGTCAGC GTTGACGGTA AAGTTGCCAC ACTGGGCGAC
CGCGTTGAAG TGACGAAAGC CACCAAAATC CGTATTGATG GTCATGTGGT TACCGTTAAG
GAAACCGAAG AAACCGTGTG TCGCGTACTG GTGTATTACA AACCAGAAGG CGAGCTGTGT
ACCCGCAACG ATCCTGATGG CCGCCCGACG GTGTTTGACC GTCTGCCGAA AATTCAGGGC
TCTCGCTGGG TGGCGGTAGG GCGTCTCGAC GTGAACACGT CCGGTCTGCT GCTGTTCACG
ACCGACGGTG AGTTAGCCAA TCGCCTGATG CATCCTAGCC GTGAGGTTGA GCGTGAATAC
GCCGTGCGGG TCTTCGGTGA AGTGGACGAC GAAAAGATCA AACAACTGAG CAAAGGCGTC
CAGTTGGAAG ACGGCCCGGC GTCGTTCCGT ACGATCCGCT ATCAGGGCGG TGAAGGTCTG
AACCAGTGGT ATAACGTGAC GCTGACAGAA GGGCGTAACC GTGAAGTTCG CCGACTGTGG
GAAGCGGTTG GCGTGCAGGT GAGCCGCCTG ATTCGCGTAC GCTACGGCGA TATTACGCTG
CCGAAAGGTC TGCCGCGCGG TGGCTGGGCA GAAATGCCGC TGGAACAGCT GAATTATCTG
CGTGAGCTGG TGCAGCTTCC GGCAGAAACG GTATCGAAAC TGCCAGTTGA GCGCGAACGT
CGTCGGGTGA AAGCGAATCA AATCCGTCGT GCGGTAAAAC GCCATAGCCA GATTAGTACC
GCTCCGGCCC GTCGTACGTC TCCGAAACCG AAGCGCAACG GCTAA
|
|---|
| Protein sequence | MSEKLQKVLA RAGHGSRREI EGIIQAGRVS VDGKVATLGD RVEVTKATKI RIDGHVVTVK
ETEETVCRVL VYYKPEGELC TRNDPDGRPT VFDRLPKIQG SRWVAVGRLD VNTSGLLLFT
TDGELANRLM HPSREVEREY AVRVFGEVDD EKIKQLSKGV QLEDGPASFR TIRYQGGEGL
NQWYNVTLTE GRNREVRRLW EAVGVQVSRL IRVRYGDITL PKGLPRGGWA EMPLEQLNYL
RELVQLPAET VSKLPVERER RRVKANQIRR AVKRHSQIST APARRTSPKP KRNG
|
|---|
| |