Gene PC1_1988 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1988 
SymboloppD 
ID8132932 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp2285516 
End bp2286511 
Gene Length996 bp 
Protein Length331 aa 
Translation table11 
GC content53% 
IMG OID644865278 
Productoligopeptide transporter ATP-binding component 
Protein accessionYP_003017565 
Protein GI253688375 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCAAGA TTGAGTTAAC TGGCGCGCAC GACGCGCTGC TACATGTTCA GGATCTCCGG 
GTAACGTTCA AAACGCAGGA TGGCGATGTA ACGGCGGTTA ACGACCTGAA TTTCACGCTC 
AACGCCGGTG AGACGCTGGG AATTGTCGGA GAATCGGGTT CCGGTAAATC ACAAACCGCG 
TTTGCGCTGA TGGGGTTGTT GGCACGCAAT GGTCGCATTG GCGGCTCCGC CCGTTTTCGT 
GGTAAAGAAA TTCTCAACCT GCCTGAAAGC CAACTGAATA AGCTACGTGC TGAAGAAATC 
AGTATGATTT TCCAGGATCC GATGACCTCG CTGAACCCTT ACATGCGCGT CGGTGAACAG 
CTGATGGAAG TGCTGATGCT GCACAAGCAT CTGAGCAAAA GCGAAGCGTT TGAAGAGTCG 
GTCAAAATGC TGGATGCGGT CAAAATGCCG GAAGCGCGTA AGCGTATGAA GATGTATCCG 
CATGAATTTT CCGGTGGGAT GCGTCAGCGC GTGATGATCG CGATGGCGCT GCTGTGTCGT 
CCAAAGTTAC TGATTGCCGA TGAACCGACA ACGGCACTGG ATGTGACGGT TCAGGCGCAG 
ATTATGACGC TGTTGAACGA GCTGAAGCGC GAGTTTAATA CCGCCATTAT CATGATCACC 
CATGACCTGG GCGTCGTTGC TGGTATTTGT GACAAAGTAC TGGTGATGTA CGCGGGACGT 
ACCATGGAAT ACGGCGCTGC CCGCGATGTC TTTTATCATC CGAGTCATCC ATATTCTGTC 
GGCCTGCTTA ATGCCGTGCC GCGTCTGGAT GCAGAGGATG AAGTATTAGC GACCATTCCG 
GGTAATCCAC CGAACTTATT ACGTCTGCCG AAAGGGTGCC CATTCCAACC GCGCTGCCCG 
TATTCAATGG ATGTCTGCCA TAGCGCACCT GCGCTGGAAT CTTTTGGTGA TGGCCGCTTG 
CGCGCCTGCT TTAGAGCGAT TGAGGAGGTG GTATGA
 
Protein sequence
MSKIELTGAH DALLHVQDLR VTFKTQDGDV TAVNDLNFTL NAGETLGIVG ESGSGKSQTA 
FALMGLLARN GRIGGSARFR GKEILNLPES QLNKLRAEEI SMIFQDPMTS LNPYMRVGEQ 
LMEVLMLHKH LSKSEAFEES VKMLDAVKMP EARKRMKMYP HEFSGGMRQR VMIAMALLCR 
PKLLIADEPT TALDVTVQAQ IMTLLNELKR EFNTAIIMIT HDLGVVAGIC DKVLVMYAGR 
TMEYGAARDV FYHPSHPYSV GLLNAVPRLD AEDEVLATIP GNPPNLLRLP KGCPFQPRCP 
YSMDVCHSAP ALESFGDGRL RACFRAIEEV V