Gene PC1_1965 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1965 
Symbol 
ID8132908 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp2258158 
End bp2259153 
Gene Length996 bp 
Protein Length331 aa 
Translation table11 
GC content49% 
IMG OID644865254 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_003017542 
Protein GI253688352 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.00751715 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTATCA AAGTAGGTAT CAACGGTTTT GGCCGTATCG GCCGTATTGT TTTCCGCGCT 
GCACAAGAGC GTTCTGACAT CGAAATCGTT GCAATCAACG ATCTGTTAGA CGCTGAGTAC 
ATGGCGTATA TGCTGAAGTA CGACTCAACT CATGGTCGTT TCAACGGCAC CGTTGAAGTT 
AAAGATGGCC ACCTGGTTGT TAACGGCAAA ACCATTCGTG TTACCGCAGA GCGCGATCCT 
GCAAATCTGA AGTGGAACGA AGTTAACGTT GACGTCGTTG CTGAAGCAAC TGGCCTGTTC 
CTGACTGACG ACACTGCACG TAAGCACATC GCTGCTGGCG CGAAGAAAGT TGTTCTGACT 
GGTCCATCTA AAGATGACAC CCCGATGTTC GTTATGGGCG TAAACCACAA AGCTTACGCA 
GGCCAGGACA TCGTTTCTAA CGCATCTTGC ACCACTAACT GTCTGGCTCC GCTGGCAAAA 
GTCATCAACG ACAACTTCGG TATCGTTGAA GCACTGATGA CCACCGTTCA TGCAACCACT 
GCAACCCAGA AAACCGTTGA TGGCCCGTCT CACAAAGACT GGCGCGGCGG CCGCGGCGCA 
GCACAGAACA TCATCCCATC TTCTACCGGT GCTGCTAAAG CTGTAGGTAA AGTTATCCCT 
GAGCTGAACG GCAAACTGAC TGGTATGGCG TTCCGCGTCC CTACCCCGAA CGTTTCTGTT 
GTTGACCTGA CAGCGCGTCT GGAAAAACCA GCTTCTTACA AAGAAATCTG TGCAGCAATC 
AAATCTGCTT CTGAAGGCGA GCTGAAAGGC GTGCTGGGCT ACACTGAAGA CGAAGTGGTT 
TCTACCGATT TCAACGGTGA AAAACTGACT TCTGTATTCG ATGCTAAAGC AGGTATCGCA 
CTGAGCGATA ACTTTGTGAA ACTGGTTTCC TGGTACGACA ACGAAACAGG TTACTCAAAC 
AAAGTTCTGG ATCTGATCGC CCACATTTCT AAATAA
 
Protein sequence
MTIKVGINGF GRIGRIVFRA AQERSDIEIV AINDLLDAEY MAYMLKYDST HGRFNGTVEV 
KDGHLVVNGK TIRVTAERDP ANLKWNEVNV DVVAEATGLF LTDDTARKHI AAGAKKVVLT 
GPSKDDTPMF VMGVNHKAYA GQDIVSNASC TTNCLAPLAK VINDNFGIVE ALMTTVHATT 
ATQKTVDGPS HKDWRGGRGA AQNIIPSSTG AAKAVGKVIP ELNGKLTGMA FRVPTPNVSV 
VDLTARLEKP ASYKEICAAI KSASEGELKG VLGYTEDEVV STDFNGEKLT SVFDAKAGIA 
LSDNFVKLVS WYDNETGYSN KVLDLIAHIS K