| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1936 |
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| Symbol | |
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| ID | 8132879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 2229638 |
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| End bp | 2231356 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644865225 |
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| Product | long-chain-fatty-acid--CoA ligase |
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| Protein accession | YP_003017513 |
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| Protein GI | 253688323 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.451048 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCACTAA AAAAATATCT CGGGAGTGAC GTCTTGGAAA AAATTTGGTT ATCACGCTAT
CCGGCGGACG TGCCGGCGGA AATCGATCCG GATCGCTATT CGTCGTTGAT TGAAATGTTC
GAAACTAGCG TGAAGCGTTA TGCCGATCGA CCTGCCTTCG TCAACATGGG TGAAGTGATG
ACGTTTCGTA AGCTGGAAGA GCGGAGTCGG GCGTTTGCGG CCTATCTGCA AAACCAGCTT
AAATTGCAAA AGGGCGATCG TGTCGCGTTG ATGATGCCCA ATCTACTGCA ATATCCCGTT
GCGCTGTTTG GCGTGTTGCG CGCGGGTCTG GTGGTGGTTA ACGTTAACCC ACTGTATACG
CCGCGTGAGC TGGAACATCA GCTAAAAGAC AGCGGGGCCA GCACGATAGT CATCGTGTCT
AACTTCGCGC ATACGCTGGA AAAAGTCGTT CATAACACGG CGGTGAAACA CGTCATCCTC
ACCCGTATGG GAGATCAGCT CTCCACGGCG AAAGGGACGC TGGTCAATTT CGTGGTGAAA
TATATTAAGC GGCTGGTGCC TAAGTATCAT CTGCCGGATG CGATATCGTT CCGTCGTGTT
TTGCAGGAAG GACGGCGTCA GCAGTATATT CGCCCCGATA TTATCAATAC CGATCTGGCA
TTTCTGCAAT ATACCGGTGG CACCACGGGC GTCGCTAAAG GCGCGATGCT GACGCACCGC
AATATGCTGG CGAATCTTGA ACAGTGTAAA GGGGCATACG GCGCTATTCT GCAAGAAGGG
AATGAGCTGG TGATCACGGC GTTGCCGCTC TATCATATTT TTGCGCTCAC GGTGAACGGC
CTTTTGTTCC TTGAATTGGG CGGTAAGAAC CTGTTGATCA CTAACCCCCG CGATATTCCG
GCGGTTGTGA AGGAACTGAA ACAATACCCG TTTACGGCTA TCACTGGCGT TAATACGTTA
TTTAACGCAC TGCTTAACAA CAAAGAATTC CACGAGCTGG ATTTCTCAAC GCTGCGTTTA
GCGGTCGGCG GTGGAGCATC GGTACAGCAA GCGGTGGCAG AACGTTGGGA AAAACTAACG
GGTAAACATC TGCTTGAAGG ATATGGGTTA ACGGAAAGTT CACCTCTGGT GGCCGTAAAC
CCTTACGATC TCAAACATTA CAGCGGCAGT ATCGGGCTAC CGGTGTCATC CACGGACGTC
AAAATCATTG ACGATGACGG CAACGATGCT GGGCCGGGTG AGTCTGGCGA GCTGTGGGTG
CGCGGGCCGC AGGTGATGTT AGGGTATTGG CAGCAGCCTG CCGCGACGGA TGAAGTGTTA
AAAGACGGCT GGCTGGCAAC GGGTGACATT GTCACCTCTG ATGATGAAGG GTTCCTGCGT
GTCATCGACC GCAAGAAAGA TATGATCCTG GTGTCCGGCT TTAACGTCTA TCCGACGGAA
ATTGAAGATG TTATCAGCCG TCATCCCAAA GTGTCCGAGT CAGCGGTGAT TGGGGTGGCG
AATGAGGTAT CCGGTGAAGC AGTCAAAGCC TTTGTGGTCA GGCGTGATAA CTCGTTAACG
AAAGAGGAAC TCATTACCCA CTGTCGCCGA AATCTTACCG GTTATAAAGT GCCGAAAGAG
ATCGAATTCT GCGACGATTT GCCGAAATCT AACGTGGGGA AAATCCTACG CCGCGAATTG
CGCGACGATA AGAAGGTGAA GAAAGACGCT GCCGCCTGA
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| Protein sequence | MPLKKYLGSD VLEKIWLSRY PADVPAEIDP DRYSSLIEMF ETSVKRYADR PAFVNMGEVM
TFRKLEERSR AFAAYLQNQL KLQKGDRVAL MMPNLLQYPV ALFGVLRAGL VVVNVNPLYT
PRELEHQLKD SGASTIVIVS NFAHTLEKVV HNTAVKHVIL TRMGDQLSTA KGTLVNFVVK
YIKRLVPKYH LPDAISFRRV LQEGRRQQYI RPDIINTDLA FLQYTGGTTG VAKGAMLTHR
NMLANLEQCK GAYGAILQEG NELVITALPL YHIFALTVNG LLFLELGGKN LLITNPRDIP
AVVKELKQYP FTAITGVNTL FNALLNNKEF HELDFSTLRL AVGGGASVQQ AVAERWEKLT
GKHLLEGYGL TESSPLVAVN PYDLKHYSGS IGLPVSSTDV KIIDDDGNDA GPGESGELWV
RGPQVMLGYW QQPAATDEVL KDGWLATGDI VTSDDEGFLR VIDRKKDMIL VSGFNVYPTE
IEDVISRHPK VSESAVIGVA NEVSGEAVKA FVVRRDNSLT KEELITHCRR NLTGYKVPKE
IEFCDDLPKS NVGKILRREL RDDKKVKKDA AA
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