Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1880 |
Symbol | |
ID | 8132823 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2170909 |
End bp | 2172132 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 644865169 |
Product | major facilitator superfamily MFS_1 |
Protein accession | YP_003017457 |
Protein GI | 253688267 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00890] Oxalate/Formate Antiporter |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0103294 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATACCA AACCTGCTAA TCGGGGATTG ATTGTCCTCG GAACCATTAT CACCCAAATG GGACTTGGCA CGATTTACAC CTGGAGTTTG TTCAATCAGC CGCTGGTGGA CAAATTTGGC TGGACGCTGA GTTCAGTAGC AACAACGTTT TCCATCACCA GTTTCTGTCT GGCATTTGCC ACGCTATTTG CTGGTAAGTT TCAGGAGCGT ATTGGTCTGC GTCGTTTGAC CATGGTTGCT GGTATTGCGC TCGGGGCAGG GCTGATGGCG AGTGCGGTGA GCCCGTCGCT GACGCTGATT TATCTGCTAA TGGGCGTGGT TGTTGGTTTT GCTGACGGTA CGGCTTACAT CACGACGCTG TCCAACCTGA TCAAATGGTT CCCTAATCGC AAAGGATTAA TCGCGGGGAT TTCTGTTGGC GCATTTGGTA CCGGAAGCCT GCTGTTCAAA TACGTAAACA GCTTTTTGAT TGCGGAGGTC GGTGTGTCGG AAGCCTTTTT CTACTGGGGC GTTATCGTCA TGGCGATGAT TCTGGTCGGT AGCTCACTGC TGAAAGAGCC TGCTGCGGTT CCGGTTCAAC AGACTGCGGT TCAGGGACAG ACACGTGATT TCTCACTGGC TGAAATGTTG GCAACGAAAG AATCGTATTT ACTGTTTATT ATCTTCTTCA CCGCATGCAT GAGTGGCCTG TATTTGATCG GTATTGTAAA AGATATCGGT GTACAAATGG CCGGAATGGA TATGGCGATG GCGGCGAATG CCGTGTCGGC GATTGCGATT TTTAATACCG TGGGACGTAT TGTGCTTGGC GCGCTTTCTG ACAGTGTCGG GCGTATGCGG GTAATCAGCT TTACGCTGTT CGTGACGATT CTCGCGGTCT CCGTGATGAC ATTCCTGCCG CTGAATCCGG TGCTGTTCTT TATCTGTGTC AGCGCGATTG CTTTCTGCTT TGGTGGCAAT ATTACGGTAT TCCCTGCGAT TGTCGGCGAC TTCTTTGGCC TGAAAAATCA CAGCAAAAAC TACGGCGTCA TTTATCAGGG ATTCGGCATT GGCGCGTTGT CTGGCTCGTT TATCGCCGCT CAGCTCGGGG GCTTCCAGGC CACATTTATG GCAATCATCA TTATGTCTGT CGTTTCTCTG CTGATTACCT TGTGGGTCAA ACCACCTAAA CATCAACCGG TCAGCACTTC ACTACGTGCG GACATGGCAC ACGCACAAAG TTAA
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Protein sequence | MNTKPANRGL IVLGTIITQM GLGTIYTWSL FNQPLVDKFG WTLSSVATTF SITSFCLAFA TLFAGKFQER IGLRRLTMVA GIALGAGLMA SAVSPSLTLI YLLMGVVVGF ADGTAYITTL SNLIKWFPNR KGLIAGISVG AFGTGSLLFK YVNSFLIAEV GVSEAFFYWG VIVMAMILVG SSLLKEPAAV PVQQTAVQGQ TRDFSLAEML ATKESYLLFI IFFTACMSGL YLIGIVKDIG VQMAGMDMAM AANAVSAIAI FNTVGRIVLG ALSDSVGRMR VISFTLFVTI LAVSVMTFLP LNPVLFFICV SAIAFCFGGN ITVFPAIVGD FFGLKNHSKN YGVIYQGFGI GALSGSFIAA QLGGFQATFM AIIIMSVVSL LITLWVKPPK HQPVSTSLRA DMAHAQS
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