Gene PC1_1869 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1869 
SymbolmnmA 
ID8132812 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp2157992 
End bp2159098 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content54% 
IMG OID644865158 
ProducttRNA-specific 2-thiouridylase MnmA 
Protein accessionYP_003017446 
Protein GI253688256 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 
TIGRFAM ID[TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.63083 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGATA ACAGCCAGAA AAAAGTGATT GTCGGTATGT CCGGCGGTGT TGATTCCTCC 
GTTTCCGCTT ACCTGTTACA GCAACAGGGC TATCATGTTG AAGGCCTGTT CATGAAGAAC 
TGGGAAGAGG ACGACGACAC GGAATATTGC TCAGCAGCCA CTGACCTCGC CGATGCGCAG 
GCCGTTTGCG ACAAGCTGGG TATCGAGTTG CATACCGTCA ACTTTGCCGC TGAATATTGG 
GACAACGTGT TTGAACTCTT CCTTGAAGAA TACAAAGCGG GCCGTACTCC CAATCCCGAT 
ATTCTGTGCA ATAAAGAAAT CAAATTCAAA GCCTTCCTGG AATTCGCCGC CGAGGATCTC 
GGAGCCGACT ATATCGCGAC AGGCCACTAT GTTCGTCGTC ACGACGTTGA CGGCAAAAGC 
CGTTTGCTGC GCGGCATGGA CGGCAACAAA GACCAGAGCT ATTTTCTTTA TACGCTGAGC 
CACGAGCAGA TCGCACAAAG TCTGTTCCCC GTCGGCGAAC TGGAAAAACC GCAGGTGCGC 
AAGATCGCCG AAGAGCTCGA GCTGGCAACC GCGAAGAAGA AAGACTCTAC CGGTATCTGC 
TTTATCGGCG AGCGCAAATT CACTGATTTT CTGGCGCGCT ACCTGCCCGC ACAGCCGGGT 
CCGATTCTGT CCGTCGATGA CAACAAACCG ATGGGGCAAC ATCAAGGGCT GATGTACCAC 
ACGTTAGGAC AGCGTAAAGG CTTGGGCATC GGCGGCGTCA AAGATGGCGG CGAAGATCCT 
TGGTACGTGG TGGATAAAGA TGTCGCCAAC AATATTCTGT ATGTCGCACA GGGCCACGAA 
CACCCTCGCC TGATGTCGCA CGGCTTAATC GCACAGCAGT TGCATTGGGT TGACCGTCAG 
CCGCTAACCG CTGAATTACG TTGTACGGTG AAAACCCGTT ACCGTCAGGC GGACATCCCT 
TGCACCGTCA CGCCGCTTGG CGACGATCGT ATTACCGTGC GTTTTGATGA GCCCGTTGCA 
GCCGTAACGC CCGGCCAATC CGCCGTTTTT TATCTGGACG ACGTGTGCCT TGGCGGCGGC 
ATCATTGAAG AACGCTTACA GGAGTAA
 
Protein sequence
MSDNSQKKVI VGMSGGVDSS VSAYLLQQQG YHVEGLFMKN WEEDDDTEYC SAATDLADAQ 
AVCDKLGIEL HTVNFAAEYW DNVFELFLEE YKAGRTPNPD ILCNKEIKFK AFLEFAAEDL 
GADYIATGHY VRRHDVDGKS RLLRGMDGNK DQSYFLYTLS HEQIAQSLFP VGELEKPQVR 
KIAEELELAT AKKKDSTGIC FIGERKFTDF LARYLPAQPG PILSVDDNKP MGQHQGLMYH 
TLGQRKGLGI GGVKDGGEDP WYVVDKDVAN NILYVAQGHE HPRLMSHGLI AQQLHWVDRQ 
PLTAELRCTV KTRYRQADIP CTVTPLGDDR ITVRFDEPVA AVTPGQSAVF YLDDVCLGGG 
IIEERLQE