| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1861 |
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| Symbol | potB |
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| ID | 8132804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2148422 |
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| End bp | 2149282 |
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| Gene Length | 861 bp |
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| Protein Length | 286 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644865150 |
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| Product | spermidine/putrescine ABC transporter membrane protein |
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| Protein accession | YP_003017438 |
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| Protein GI | 253688248 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.317879 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGAAGT CGCGTAAACG CTTTCAAAAC ACCATTATCA CACTTATCGT TGCCTGGCTG
GTGCTGTTTG TTTTCCTGCC CAACCTGATG ATCATCGCAA CCAGTTTTCT GACGCGCGAT
GACACACATT TCGTCAGTCT GGTCTTTACG CTGGAAAATT ACACGCGACT GGTCGATCCG
CTTTATGCAT CAGTCCTGCT GCATTCGCTG AACATGGCGG CTATCGCCAC GCTCTGCTGT
CTGCTGCTGG GATATCCGTT TGCCTTTATT CTGGCGCGCT TACCGAAAAA AATTCAGCCA
CTGATGCTGT TTCTGCTGAT TGTGCCCTTT TGGACCAACT CGCTGATCCG CATTTATGGG
CTGAAAATCT TTCTCAGCAC GCGCGGCCAT CTGAATGAAT TTCTGCTCTG GACTGGCCTG
ATTGATACGC CGCTACGGAT CATGTACACC TCCGAAGCGG TCATTCTCGG CCTGATTTAC
ATCTTGCTGC CTTTTATGGT GCTGCCGCTC TATTCCAGCA TTGAAAAGCT CGATAAATCC
TACCTTGAAG CCGCTCGCGA TCTAGGTGCC AATAAGTGGC AAACCTTTAC TCGCGTGGTA
ATCCCGCTGA CCATGCCGGG GATTATCGCT GGCTGCCTGC TGGTGCTGCT GCCCGCCATG
GGACTGTTTT TCGTGGCCGA CCTGATGGGC GGTGCCAAGA ATCTGCTGAT CGGTAACGTC
ATTAAAAGCC AGTTCCTCAA TATCCGCGAT TGGCCGTTTG GTGCCGCGAC CAGTATCTGC
CTGACGCTGG TCATGGGCGT GCTGCTGTTT ATCTACTACC GTACAGCCCG CCTGCTGAAT
AAAAAAGGAG AGCTGGAATG A
|
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| Protein sequence | MKKSRKRFQN TIITLIVAWL VLFVFLPNLM IIATSFLTRD DTHFVSLVFT LENYTRLVDP
LYASVLLHSL NMAAIATLCC LLLGYPFAFI LARLPKKIQP LMLFLLIVPF WTNSLIRIYG
LKIFLSTRGH LNEFLLWTGL IDTPLRIMYT SEAVILGLIY ILLPFMVLPL YSSIEKLDKS
YLEAARDLGA NKWQTFTRVV IPLTMPGIIA GCLLVLLPAM GLFFVADLMG GAKNLLIGNV
IKSQFLNIRD WPFGAATSIC LTLVMGVLLF IYYRTARLLN KKGELE
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