Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1853 |
Symbol | |
ID | 8132796 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2139426 |
End bp | 2141441 |
Gene Length | 2016 bp |
Protein Length | 671 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644865142 |
Product | carboxy-terminal protease |
Protein accession | YP_003017430 |
Protein GI | 253688240 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0793] Periplasmic protease |
TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.535922 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACAACT TAGTCAGAAT AACCGCCATC GCAGGCTTAC TGCTGGCGGG CTCTAGTTTT GCAAATGAAA ATATTACGCG TGTTGATCAG ATTCCTCAGC TACATCAGGA ACCTCAACAT GCCACCGTTA GCGACCGGGT GGCCTCACGT TTTCTGCGTT CGCATTACCG CCAGTTTATG CTGGATGCGC AGTTCTCTGA GAAGATTTTT AATCGCTACC TCAACATGCT GGACTACAGC CACAACGTGC TGTTGGCCTC TGATATCGCG CAGTTTTCCG GGCAAAAAGC CCAGTTGGGC GATGCGTTGA AATCGGGCCA GTTGGATGTG CCGTACGCGC TGTACAATCT GGCGCAGAAG CGTCGGTTTG AGCGTTTTCA ATATGCGCTG TCGCTGCTGG ATAAACCGGT CGATCTGACG GGCAATGACA CGTTTGAGCT TGACCGCAGC AAAGCCCCTT GGCCGCAGAA TGTCGGTGAG CTTAACCGCC TGTGGGATGC CAAGGTAAAA TATGACTGGC TCAGCCTGAA GCTGACCGGT AAAGATGATA AAGACATCAA AGAGACGCTG ACCAAGCGTT ACCAGTTTGC GATTCGCCGC TTGGCGCAGA GCAACAGCGA AGATGTTTTC CAACTTGTCA TGAACGCCTT TGCGCGTGAA ATTGACCCGC ATACCAGCTA CCTGTCACCG CGTAACACCG AGCAATTCAA CACCGAAATG AGCCTGTCGC TCGAAGGGAT TGGTGCGGTG CTGCAGATGG ATGACGACTA CACCATGATT AATTCTATGG TGCCCGGTGG TCCGGCTGCG AAAAGCAAAA ACATTACCGT GGGTGACCGT GTGGTTGGCG TCGGCCAAAA CGGCAAGCCA ATGGTGGATG TCATCGGTTG GCGTTTGGAT GATGTGGTCG CACTGATCAA AGGGCCGAAA GGCAGTAAGG TGCGTCTGGA AATTCTGCCC GCAGGCAAAG GGACGAAGAC CCGTATTGTT ACGCTGACGC GCGAACGTAT CCGCCTTGAA GACCGTGCGG TCAAAATGTC CGTCAAGACA GTCGGCAAAG ATAAAGTTGG CGTGCTGGAT ATCCCCGGTT TCTATGTCGG CCTGACGGAT GACGTAAAAG TTCAGCTCCA GAAGCTGGAA AAACAGAACG TCAGCAGCAT TGTGATTGAC TTACGTACTA ACGGCGGCGG TGCGCTGACG GAAGCGGTAG GACTTTCCGG CCTGTTTATT CCTAGTGGCC CTGTAGTTCA GGTGCGCGAT AATAATGGCA AAGTGCGTGA AGACAGCGAC ACCGACGGCA TTGTGTATTA CAAAGGCCCG CTGGTGGTAC TGGTAGACCG CTTCAGTGCT TCCGCTTCCG AGATCTTTGC GGCGGCGATG CAGGATTATG GCCGTGCCTT GATCGTGGGT GAACCGACGT TTGGTAAAGG CACCGTGCAG CAGTATCGCT CGCTGAATCG GATTTACGAT CAGATGCTGC GTCCCGACTG GCCAGCGCTG GGTTCCGTGC AATACACGAT TCAGAAGTTC TATCGCATTG ACGGTGGCAG TACTCAGATG AAAGGCGTGA CGCCTGATGT GATGATGCCA ACCGGCACGG AAACAGTAGA TACCGGCGAG AAGTTTGAAG ACAACGCGCT ACCGTGGGAC AGCATCAAAG CGGCTAACTA CACGAAGAGT GGCGATCTGA AAGCGCTGAT TAGCACACTG AATGAGCATC ATCAGGAGCG TATCGCCAAA GATCCTGAGT TCCAGTACGT CGCGCAAGAT ATTGCCCGCT ACAACGCGCT GAAGGATAAG CGCAACATCG TGTCGCTCAA TCTTGCTCAG CGTGAGAAAG AGAATGATGA CGATGAAGCG ATGCGTCTGA AGCGGATTAA CGATCGACTG GCGAGAGAAG GTAAGAAACC ACTCAAATCG CTGGAAGATT TGCCGAAAGA TTATCAGGCT CCCGATCCTT ATCTGGATGA AACAGTGAAG ATCGCTCACG ATTTAGCGCA GGAACAGAAA GACTGA
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Protein sequence | MNNLVRITAI AGLLLAGSSF ANENITRVDQ IPQLHQEPQH ATVSDRVASR FLRSHYRQFM LDAQFSEKIF NRYLNMLDYS HNVLLASDIA QFSGQKAQLG DALKSGQLDV PYALYNLAQK RRFERFQYAL SLLDKPVDLT GNDTFELDRS KAPWPQNVGE LNRLWDAKVK YDWLSLKLTG KDDKDIKETL TKRYQFAIRR LAQSNSEDVF QLVMNAFARE IDPHTSYLSP RNTEQFNTEM SLSLEGIGAV LQMDDDYTMI NSMVPGGPAA KSKNITVGDR VVGVGQNGKP MVDVIGWRLD DVVALIKGPK GSKVRLEILP AGKGTKTRIV TLTRERIRLE DRAVKMSVKT VGKDKVGVLD IPGFYVGLTD DVKVQLQKLE KQNVSSIVID LRTNGGGALT EAVGLSGLFI PSGPVVQVRD NNGKVREDSD TDGIVYYKGP LVVLVDRFSA SASEIFAAAM QDYGRALIVG EPTFGKGTVQ QYRSLNRIYD QMLRPDWPAL GSVQYTIQKF YRIDGGSTQM KGVTPDVMMP TGTETVDTGE KFEDNALPWD SIKAANYTKS GDLKALISTL NEHHQERIAK DPEFQYVAQD IARYNALKDK RNIVSLNLAQ REKENDDDEA MRLKRINDRL AREGKKPLKS LEDLPKDYQA PDPYLDETVK IAHDLAQEQK D
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