| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1769 |
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| Symbol | |
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| ID | 8132711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 2041296 |
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| End bp | 2043089 |
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| Gene Length | 1794 bp |
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| Protein Length | 597 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644865057 |
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| Product | lipid transporter ATP-binding/permease protein |
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| Protein accession | YP_003017346 |
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| Protein GI | 253688156 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.631617 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAAA TGGTCGGCTA TTTCTTTCCG CTTCAGGTTT ACTACATGCT GAATGATAAA
GATCTCTCCA CCTGGCAGAC TTTTCGTCGC CTTTGGCCGA TGATCTCTCC TTTTAAAGCA
GGGCTTGTTA TTGCTGCGAT TGCTCTCATT ATTAACGCAG CCAGCGATAC ATTAATGCTC
TCTCTGCTTA AACCCTTGTT AGATGACGGA TTTGGCAAGG CGGAACGTGC CGTATTGATC
TGGATGCCGC TGGTGGTCAT CGGCCTTATG ATACTGCGCG GGGTGTCAGG ATTTATATCC
AGCTACTGCG TCGCCTGGGT TTCGGGCAAA GTGGTGATGA ACATGCGTCG CCGTCTTTTC
TCCCATATCA TGGGGATGCC GGTGGCGTTT TTTGACCAGC AGTCAACCGG GACGCTGCTT
TCCCGTATTA CTTATGATTC CGAACAGGTT GCGGCCTCTG CGTCCGGTGC GTTGGTTACC
GTCGTCAGAG AAGGGGCATC GATTATCGGC CTGTTCATTC TGATGTTCTA CTACAGCTGG
CAGTTGTCCA TCATTCTGAT TGTGATTGCG CCGATCGTGT CGATCGCTAT GCGCGTGGTG
TCCAAACGGT TCCGCAGTAT CAGTAAAAAT ATGCAGGATA CAATGGGGCA CGTCACTACC
AGCACCGAGC AAATGCTAAA AGGCCATAAA GAAGTGCTGA TGTTTGGCGG TCAGGACGTT
GAGACTAAAC GTTTCGATCA GGTCAGTAAC CGGATGCGCC AACAGGGCAT GAAACTGGTG
TCTGCCTCAT CAATCTCCGA TCCTATCATC CAGTTGATCG CTTCGCTGGC GCTGGCATTT
GTACTGTATG CCGCCAGCTT CCCTAGCGTA ATGGAAACGT TGACTGCCGG GACGATCACG
GTGGTGTTCT CTTCCATGAT CGCGCTGATG CGTCCGTTAA AATCACTGAC CAACGTTAAC
GCGCAATTCC AGCGTGGGAT GGCCGCGTGC CAGACGCTGT TCGCGATTCT GGATATGGAA
CAGGAGCGCG ATACGGGTAA ACGCGAAATC GAGCGAGCGA AAGGCGAACT TGAATTCCGT
CAGGTGAATT TTGCTTATCC TGGTAAGGAA AATCTGGCGC TGAAGGATAT CAATCTGCAT
ATCCCAGCAG GAAAAACGGT GGCATTGGTT GGGCGCTCTG GTTCGGGTAA ATCAACGATT
GCCAGCTTGA TTACACGTTT TTACGACATC CAATCAGGTG AGGTTTTGCT CGATGGCCAC
GACCTACGTG AGTATCGCCT GTCCTCCTTG CGTAATCAGG TGGCGTTGGT TTCTCAAAAC
GTGCATCTGT TTAACGATAC GATAGCGAAC AATATCGCCT ATGCCCGCAA TGAGCACTAT
AGCCGTGAGG AAATTGAGCG CGCGGCGAAA ATGGCGCATG CGATGGATTT CATCAATAAG
ATGGATCACG GTTTGGATAC GGTCATTGGT GAAAATGGCG TGATGCTTTC CGGTGGGCAA
CGGCAGCGCA TCGCGATTGC CCGCGCGCTG CTGCGTGATA GCCCGATCCT GATCTTGGAT
GAGGCTACGT CGGCGTTGGA TACGGAATCT GAACGTGCGA TTCAATCTGC CTTAGACGAA
CTGCAAAAAG ATCGTACTGC TTTGGTGATT GCACACCGTC TCTCCACGAT TGAAAAAGCG
GATGAGATTC TGGTGGTTGA GGATGGCAGA ATCATTGAAC GTGGTAACCA TGTTGCATTG
TTGGCGGCAA ACGGTGCCTA TGCCCAACTC CATAAAATGC AGTTTGGCGA ATGA
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| Protein sequence | MSKMVGYFFP LQVYYMLNDK DLSTWQTFRR LWPMISPFKA GLVIAAIALI INAASDTLML
SLLKPLLDDG FGKAERAVLI WMPLVVIGLM ILRGVSGFIS SYCVAWVSGK VVMNMRRRLF
SHIMGMPVAF FDQQSTGTLL SRITYDSEQV AASASGALVT VVREGASIIG LFILMFYYSW
QLSIILIVIA PIVSIAMRVV SKRFRSISKN MQDTMGHVTT STEQMLKGHK EVLMFGGQDV
ETKRFDQVSN RMRQQGMKLV SASSISDPII QLIASLALAF VLYAASFPSV METLTAGTIT
VVFSSMIALM RPLKSLTNVN AQFQRGMAAC QTLFAILDME QERDTGKREI ERAKGELEFR
QVNFAYPGKE NLALKDINLH IPAGKTVALV GRSGSGKSTI ASLITRFYDI QSGEVLLDGH
DLREYRLSSL RNQVALVSQN VHLFNDTIAN NIAYARNEHY SREEIERAAK MAHAMDFINK
MDHGLDTVIG ENGVMLSGGQ RQRIAIARAL LRDSPILILD EATSALDTES ERAIQSALDE
LQKDRTALVI AHRLSTIEKA DEILVVEDGR IIERGNHVAL LAANGAYAQL HKMQFGE
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