| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1724 |
|---|
| Symbol | |
|---|
| ID | 8132666 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1990096 |
|---|
| End bp | 1991037 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644865012 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_003017301 |
|---|
| Protein GI | 253688111 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTTAG ATAAACTGGA GATCCGCTGG TTAAAACTTT TTTGTAAAAT TGTTGAAAAA
CAAGGAATTA CCAACGCGCA AGACGCAACA GGCCTAAGCC AGCCCGTGTT AAGTCACTAC
CTATCTCGCC TTGAGGATAC ACTTGGACTC GTTTTGTGTG AGCGTGGGCG CGGTGGTTTT
GCCTTAACAA CCGAAGGTGA AGTGGTCTAT CAGGAAGCTA AATCTGTCAT CGCTACGTTG
GACGATTTTG CTAATCGATT GGCAAGTATA AAACATCAGC TTATTGGTAA AGCTCGGATT
GGTTGTCTGG ATAATACCGT GACTCACCCA GACAAAGTCA TTTCTAACGC TATTGGCAAA
TTGTACGACC AAAGCCCTGA TGTTGCAGTG GAACTAGAGA TTGGTGATTA TACACCATTA
ATGGAACGCC TAAAAAATGG TCACCTTGAT ATCATTCTGA GCGTCTTACC AGATGATGTT
CCAATAGATA TCCATTTCCA GCCTGTTTTC GTTGAAAAAA GCCATTTTTA TTGTGCGTCT
GAACACGGGG AACGTATAGA AAGAGAGTGG CACGAGGGCA CACTTAACCC TAACAGACTG
CTCATCGGTG GGCATGCACT ACACGAAATT AGTAAACAGT TAGGGCCTGT TGCAAAGAAA
GGTTTGCAGG ATACAGCATG GAATGTAGAA GCAAGTTTAC TGCTGCTGCT GGCAGGCACC
CATATTGGTT TTCTTCCCGA TCACTATGCT GCCCCTTGGG TTGAGAAAGG GAAACTCACC
GCAATTTCAC CAGACCGTTT AAAACTAACC AGCATATTTT ATCTGGTGCG AAATGCAAAA
CAGCGCCTTA GCCCAGTCGC TGAAGCGCTG TGGAATAACA TGGTGGAAGC GGGACAAAGC
TCGCTTGCTG GCCTTGATGT CTCGACCTCA AGCTGCAGCT AA
|
|---|
| Protein sequence | MRLDKLEIRW LKLFCKIVEK QGITNAQDAT GLSQPVLSHY LSRLEDTLGL VLCERGRGGF
ALTTEGEVVY QEAKSVIATL DDFANRLASI KHQLIGKARI GCLDNTVTHP DKVISNAIGK
LYDQSPDVAV ELEIGDYTPL MERLKNGHLD IILSVLPDDV PIDIHFQPVF VEKSHFYCAS
EHGERIEREW HEGTLNPNRL LIGGHALHEI SKQLGPVAKK GLQDTAWNVE ASLLLLLAGT
HIGFLPDHYA APWVEKGKLT AISPDRLKLT SIFYLVRNAK QRLSPVAEAL WNNMVEAGQS
SLAGLDVSTS SCS
|
|---|
| |