Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1716 |
Symbol | |
ID | 8132658 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 1977415 |
End bp | 1979181 |
Gene Length | 1767 bp |
Protein Length | 588 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644865004 |
Product | cysteine/glutathione ABC transporter membrane/ATP-binding component |
Protein accession | YP_003017293 |
Protein GI | 253688103 |
COG category | [C] Energy production and conversion [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components |
TIGRFAM ID | [TIGR02857] thiol reductant ABC exporter, CydD subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.238801 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAA CCAGACAGCA AGAACTGACC GCCTGGCTGA AGCAGCAGAG TAAGCTGGCG CAACGTTGGC TACGCATTTC ACTGCTGCTT GGGTTCCTGA GCGGTGCATT AATCGTTGCA CAAGCCTGGC TGTTAGCGAC GCTGCTCCAT GCCTTGATCA TCGAGCATGC TCCCCGTGAA TCTCTGCTCT CCCCTTTTCT TCTTCTGATC GCCACATTTG TTCTGCGTGC GCTTAACAGC GTGTTACGCG AGCGTGTCGG TTTTCTATGC GGGCAAGCCG TTCGACAGCA AATTCGTAAG CTGGTACTGG ATCGATTGCA ACAGCTTGGC CCTGCCTGGG TACAAGGCAA ACCTGCGGGC AGTTGGGCAA CGATGATTCT TGAGCAGGTT GATGATATGC AGGATTATTA CGCCCGCTAC CTGCCGCAAA TGTATCTTGC CGCACTGATC CCGTTGCTTA TTTTAATCAC GATCTTCCCA CTCAATTGGG CTGCAGGCTT GATTCTGTTT CTCACCGCCC CACTCATTCC GCTTTTTATG GCGCTGGTCG GTATGGGTGC GGCGGATGCC AACCGACGTA ACTTTCTGGC GTTGGCACGC CTGAGCGGAC ATTTCCTCGA TCGCCTACGC GGGATGGAGA CACTACGCCT GTTCCATCGA GGCGAGGCTG AAACCGAACA AATCCGCCAC GCGTCCGAAG ATTTTCGCAG TCGCACGATG GAAGTGCTGC GCATGGCATT TCTTTCCTCG GGCGTACTGG AGTTTTTTGC CTCCATTTCG ATCGCCGTTG TCGCCGTCTA TTTCGGTTTC TCTTATCTCG GAGAACTGGA TTTCGGTCAT TACGGCATGG GTGTGACACT CTTCGCCGGT TTTCTCGTGC TGATTCTGGC GCCGGAGTTT TTTCAGCCTT TACGCGATCT GGGCACGTTC TATCATGCCA AGGCTCAGGC TATCGGCGCA GCGGAATCGC TGGTGACCTT TTTAGCCGAG GAAGGTGAAA CGGTAGGCTT TGGCACCCAA ACATTCAGCA GTGATAGCGC TATTGCCATT CGGGCGGAAG ATTTGGTCGT CCTCGCGCCC AATGGCACAC CACTCACTCA ACCGTTGACG TTCGATATTC GTGCAGGCGA GCGTATCGCG CTGGTCGGCC TCAGCGGCGC AGGAAAAAGC TCGCTGCTTA ATGCCTTGCT GGGGTTCCTG CCCTATCGCG GCTCATTAAC AGTCAACGGT CAGGCCCTGA ACACGCTAAC GCCTGAATCA TGGCGTAAGC AGTTAAGCTG GGTTGGGCAA AATCCCCATT TACCGGAACA GACGCTGCGC AGCAATATTC TGCTGGGTAA CCCGCAGGCC AGCATTGTGG AGTTACAGCG GGCAATTGAG CGCGCCTATG TGCAGGAATT CTTACCACAG CTCCCACAAG GGCTGGAAAC CACGATCGGT GACGGCGCAG CGCGCTTATC CGTCGGTCAG GCGCAGCGCG TTGCCGTTGC CCGTGCGCTT ATCCACCCTT GCAACTTATT GCTGCTGGAT GAACCATCAG CCAGTCTGGA TGCCCACAGC GAAGAGCTGG TTATGACGGC GTTAAACGAC GCTGCGCGTC ACCAGACCAC GCTGCTGGTG ACGCACCAGC TCGCCGATAT CACCGAATAT GATGCAATTT GGGTAATGGA CGGCGGTCAG CTAGTCCAAC AAGGTGATTA TCAAACACTC CGAGCCGAAG CAGGCCCCTT TGCAACGCTG CTGGCACAAC GACAGGAGGC ACTGTAA
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Protein sequence | MKKTRQQELT AWLKQQSKLA QRWLRISLLL GFLSGALIVA QAWLLATLLH ALIIEHAPRE SLLSPFLLLI ATFVLRALNS VLRERVGFLC GQAVRQQIRK LVLDRLQQLG PAWVQGKPAG SWATMILEQV DDMQDYYARY LPQMYLAALI PLLILITIFP LNWAAGLILF LTAPLIPLFM ALVGMGAADA NRRNFLALAR LSGHFLDRLR GMETLRLFHR GEAETEQIRH ASEDFRSRTM EVLRMAFLSS GVLEFFASIS IAVVAVYFGF SYLGELDFGH YGMGVTLFAG FLVLILAPEF FQPLRDLGTF YHAKAQAIGA AESLVTFLAE EGETVGFGTQ TFSSDSAIAI RAEDLVVLAP NGTPLTQPLT FDIRAGERIA LVGLSGAGKS SLLNALLGFL PYRGSLTVNG QALNTLTPES WRKQLSWVGQ NPHLPEQTLR SNILLGNPQA SIVELQRAIE RAYVQEFLPQ LPQGLETTIG DGAARLSVGQ AQRVAVARAL IHPCNLLLLD EPSASLDAHS EELVMTALND AARHQTTLLV THQLADITEY DAIWVMDGGQ LVQQGDYQTL RAEAGPFATL LAQRQEAL
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