| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1697 |
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| Symbol | rumB |
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| ID | 8132639 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 1956897 |
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| End bp | 1958027 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644864985 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_003017274 |
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| Protein GI | 253688084 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.723414 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATTGTG CCCGCTACAG CACGGGAACC TGTCGTTCCT GCCAATGGCT GGAAAAAGCC
TACCCACAGC AGCTATCCGA TAAGCAACAG CACCTTGAAG GCTTGCTACA GCCGCACGCC
GTGCAGCGCT GGCTACCGGT GCAGCCCTCT GCACAGTCTG CCTTTCGTAA TAAAGCCAAA
ATGGTGGTGA GCGGCAGTGT GGAGCGCCCG CTACTGGGGA TGCTGCATCG TGATGGAACG
GCGGTGGATC TTTGCGACTG CCCGCTTTAT CCGTCCAGCT TCGCGTCGGT TTTCGACGTG
CTTAAAGTCT TCATCGCTCG AGCGGGGCTG ACGCCTTATA ACGTGGCCCG ACGCCGTGGG
GAGCTGAAAT ACCTGCTGCT GACGGAAAGT ACGCAGCGCG GCACGTTTAT GCTGCGTTTT
GTTTTACGTT CGGAAACCAA ACTGGCGCAG TTGCGTGCCG CATTGCCTTG GCTACAGCAG
CAGTTACCGC AGCTTGAGGT GATATCCGCC AATATCCAGC CGGTCCATCA GGCGATAATG
GAAGGGAAAA CGGAAATCAT CCTGAGTGAG GCTGCCGCGT TGGCCGAACA GTTCAATCAG
GTGCCGCTGT ATATCCGCCC GCAAAGTTTT TTCCAGACGA ACCCGCAGGT GGCTGCCGCG
CTGTATGCGA CGGCACGTGA CTGGGTTGCA GAGCTGAATA TTACCAGCAT GTGGGATCTG
TTTTGCGGAG TAGGGGGATT TGGTCTGCAC TGCGCGTCAC CCGAGATGCG TTTGACAGGG
ATTGAAATCA GCGCTGAGGC GATAGCCTGC GCACGCCGCT CTGCGGAACA GCTTGGGCTG
AAACAGGTGG AGTTTCAGGC GTTGGATTCC ACGCAGTTTG CGACAGGTAA AGCGGAAATT
CCCGAGCTGG TGCTAGTCAA CCCGCCACGC CGCGGTATCG GCAGCGAACT GTGCACCTAC
CTGAGCCGAA TGGCACCGGA CTATATTCTC TATTCCAGCT GTAACGCTGA AAGCATGGCA
AAAGACATGA CCGAGCTGAC GAATTACCGT GCGCTGCGCG TACAACTGTT CGACATGTTC
CCGCATACGG CACATTACGA AGTGCTAACG TTATTGAAGC GGGAAATATA G
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| Protein sequence | MHCARYSTGT CRSCQWLEKA YPQQLSDKQQ HLEGLLQPHA VQRWLPVQPS AQSAFRNKAK
MVVSGSVERP LLGMLHRDGT AVDLCDCPLY PSSFASVFDV LKVFIARAGL TPYNVARRRG
ELKYLLLTES TQRGTFMLRF VLRSETKLAQ LRAALPWLQQ QLPQLEVISA NIQPVHQAIM
EGKTEIILSE AAALAEQFNQ VPLYIRPQSF FQTNPQVAAA LYATARDWVA ELNITSMWDL
FCGVGGFGLH CASPEMRLTG IEISAEAIAC ARRSAEQLGL KQVEFQALDS TQFATGKAEI
PELVLVNPPR RGIGSELCTY LSRMAPDYIL YSSCNAESMA KDMTELTNYR ALRVQLFDMF
PHTAHYEVLT LLKREI
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