Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1676 |
Symbol | |
ID | 8132618 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 1933585 |
End bp | 1935432 |
Gene Length | 1848 bp |
Protein Length | 615 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644864964 |
Product | glycosyl transferase family 8 |
Protein accession | YP_003017253 |
Protein GI | 253688063 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1442] Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGGCAC AAGAAAAGGA TTTTGTTTCC TCACATCATA CCGGAGGGCC CGTTGTACCG CCCTTTGTTT CAGATCATTT ACCGGCTAAC CGAATGGCCG GGCCTACGGC TAGCAGTGCC ATAACCGATG CCTATTTCGG TACTGAGATA GGCAGAATAT TACTTAATCT GCACGACGCC AGCATCGCGT TTGCTGCGCT GCAACAGAAT AATGCAGGTG TTTCTCAGGT TACGTTGACA ACCGGTTACC TACAACTATG CCTCCGTTAT GGTGCCGATC AAGGTGTCGC CCGCTTGCTA AAGAGCGTGC AAATGGCATA CGTGCATAGC TGTTATCACG CGCTGATCGG TGTCGCAACT CGTCTCATTA ATGCAGGTCT GATGTCCGAC GCCGAATCGG TCATTGCACA CTTATGTAAG TTCACGGGGC CGACTGCAGA GATTAGGATT CTCCGTTTAA AATTCCTGTT TAAGGCTGCA CAGTTCGACG AGTTGCACAA ACAATTTGCC CATATTCCGT TACGGGATTA TCGGATCAAT GCGGAACTTC TTATGCTGCG TGTTCGATAC GAGTGTATTA CAGGAAGACC CGATGCCGGG CTCACATGGC TGGACGAGTT CGGCCCTCGC AACACGCTAC CTGTCGATCT CATGTGGTCA GCGGCACAAT GTCTGAACGA ACTCGGCAAA TTTGAAGATG CCTTAGCTTT ACTTGAGGTG TGGATCAGCC TCGATTTCTC TTTTAAGGAT CACGCCGAAC TGGTGCTGAA TACCGCGTCA AAAAGCAGTG GCACCTTGAG GCTCGTGCGG GCTATCGAGG CATTACATGG CTGGTTCACT TCGCTCGACC TGTTACACCT GCGTACCGCA TTACTCCAAA CAATTGAAGC ACGCCATTCT GCTCATGCAA AAGTGACTTC TGTTGATGAA AAGCAGAGCA TCAGAGAGCT CGACTTCCCC TACGCCAACG GCATGATATC CATGACGACC CTAAGGCAAA GACACGCTAT TTTCTTATGT GCTGATACAG CATATAACGT TCCAGCGCTG GTAGCGCTAA CCTCGTTGGC AATGTCGATT GCACAGGCTA ATCCTCCCCC CGACATTTAT ATGTTTGTTC TGCCTGAAAC GCATGAAATC TGGAGCCAGA TCGCACATTG TTTTGCCAAA AAATTTCCTC TGACAGTAAA AATTGTATCG ACATTACAGA TGGATCTCGA TGAAAGCCGA GCGCACTACG GGTTTCAAAA CTACGGCAAA ATGCTGAGCA TCACCGCGTA CGCCCGGCTT TACGCAAGCC GCTATTTGCA AGGACTTGGT ATTACACGCG CACTGTATTT AGACTCCGAT GTTGTTATCC GCCGTTCACC ACTTGGTTTG CTACATATGG ACATGGGAGG GTATCCCCTC GCAGCACGTA CTGAACGTGC ACACCCAAGA ATCAGCCGCG CGATTAAGCT GCACGGTATT CCCAACGGCC GCTATTTTAA CTCTGGTATT TTGCTGCTTG ATTTCCAGCA TCCGGCAACG CAATCAACGC TAAATACGGC CATCGCTTAT AGCGAGCAAC TCGACAACAA GCTGCTCTAT CTAGATCAAT GTGCGCTGAA CAAATCCATT CAGGGGCTGT ATCTGGATTT GGATGAAAAA TTTAACTGGT TCATTGTTCC TGACGATACT GCCCATCCTC AAGACGAGGA TGCCGCGATC ATGCATTTTA TCAGCACGCC GAAACCCTGG GATCTTAACT ACAGCGGGAG AGGAGCAACA CTTTGGGCCG ACTACAAACA TCATGCAATA CAGGTGATCG GCGAGGGTAT TTTTTACGCC ATAAGCAAGG TGGCATGA
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Protein sequence | MAAQEKDFVS SHHTGGPVVP PFVSDHLPAN RMAGPTASSA ITDAYFGTEI GRILLNLHDA SIAFAALQQN NAGVSQVTLT TGYLQLCLRY GADQGVARLL KSVQMAYVHS CYHALIGVAT RLINAGLMSD AESVIAHLCK FTGPTAEIRI LRLKFLFKAA QFDELHKQFA HIPLRDYRIN AELLMLRVRY ECITGRPDAG LTWLDEFGPR NTLPVDLMWS AAQCLNELGK FEDALALLEV WISLDFSFKD HAELVLNTAS KSSGTLRLVR AIEALHGWFT SLDLLHLRTA LLQTIEARHS AHAKVTSVDE KQSIRELDFP YANGMISMTT LRQRHAIFLC ADTAYNVPAL VALTSLAMSI AQANPPPDIY MFVLPETHEI WSQIAHCFAK KFPLTVKIVS TLQMDLDESR AHYGFQNYGK MLSITAYARL YASRYLQGLG ITRALYLDSD VVIRRSPLGL LHMDMGGYPL AARTERAHPR ISRAIKLHGI PNGRYFNSGI LLLDFQHPAT QSTLNTAIAY SEQLDNKLLY LDQCALNKSI QGLYLDLDEK FNWFIVPDDT AHPQDEDAAI MHFISTPKPW DLNYSGRGAT LWADYKHHAI QVIGEGIFYA ISKVA
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