Gene PC1_1626 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1626 
Symbol 
ID8132567 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp1874406 
End bp1874891 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content43% 
IMG OID644864913 
Producttype VI secretion system effector, Hcp1 family 
Protein accessionYP_003017203 
Protein GI253688013 
COG category[S] Function unknown 
COG ID[COG3157] Hemolysin-coregulated protein (uncharacterized) 
TIGRFAM ID[TIGR03344] type VI secretion system effector, Hcp1 family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTAATT ATGCATACAT GACTATCGAA GGTAAATCAC AGGGATTGAT TTCTGAGGGT 
TGCTCCACAT TAGAATCTAT TGGTAACCGA TATCAGGCAG GACATACCGA TGAAATCATG
ATCTTGGCTT TCAACCATAT GATGAGCAAT GATGGTCATG CAGTCCATAA TCCGATCACC
CTGGTAAAAC CTATCGATAA GTCAACGCCG TTACTGGCAA TGGCATTGAA CGAGCAAGAG
AAGGTCAAAG TGTTGATCGA CTTTTACCGC ACGACGCAAC ATGCCAAGCA AGAGAAGTTT
TTCTCCATTC AGATCAATGA TGGACTCATA TCTGATATCA ACCTCGTTAT GCCCAACATC
ATTGATGATG GTGCTGGCCT GATATTAGAG CATATCTCTA TCAGGTATAA AGATGTGACA
TGGACGCACC ACAAAGCCGG GACGTCTGGT TATGCACTGT GGGAAATGAC GAAGTTCATG
AACTAA
 
Protein sequence
MANYAYMTIE GKSQGLISEG CSTLESIGNR YQAGHTDEIM ILAFNHMMSN DGHAVHNPIT 
LVKPIDKSTP LLAMALNEQE KVKVLIDFYR TTQHAKQEKF FSIQINDGLI SDINLVMPNI
IDDGAGLILE HISIRYKDVT WTHHKAGTSG YALWEMTKFM N