| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1587 |
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| Symbol | |
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| ID | 8132528 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1840172 |
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| End bp | 1841059 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644864875 |
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| Product | threonine and homoserine efflux system |
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| Protein accession | YP_003017165 |
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| Protein GI | 253687975 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5006] Predicted permease, DMT superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00642491 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTTAT TTTCCCACCG CTCCTCATCG TTTGTACCGG TCTTGCTCAT CATTATCTCA
ATGCTTTCTA TCCAAAGCGG CGCGGCTTTG GCCAAGAGTC TGTTTCCACT CATTGGTGCT
ACCGGCGTAA CGGCATTGCG TCTGGGAATT GGTACGATCA TTCTGTGCGT CATCTTCAAA
CCGTGGCGAA TGCGCTTTAG CAGTAACCGC CTGCCGCTGC TGGTGTATGG CATCACGCTG
GGCGGGATGA ACTTTCTGTT CTATCTCTCA CTGCAGACGG TGCCGCTCGG CATTGCTGTT
GCACTCGAGT TCACCGGCCC GCTTGCCGTT GCTATGTTAG CTTCACGCAG GCCTATCGAT
TTTCTATGGG TTTTTCTGGC CGTTGCCGGG CTATGGTTCT TATTACCGCT GGGTCACAAT
ATCGGCAATG TTGATTTGGT GGGCGCGGCT TGCGCCGTGG GTGCGGGTGC CTGTTGGGCG
CTCTATATTC TGTTTGGGCA AAAAGCAGGC TCAAATCATG GGCCGGGAAC AGTCGCAATC
GGCTCCTGCA TTGCCGCACT GATTTTCTGC CCTATTGGCG CATATTATGC GGAAAGCACG
CTGTTTTCAC TATCAATACT CCCGCTCGGT GTTGCCGTCG CGGTTCTGTC CACCGCGCTC
CCCTACTCTC TGGAAATGGT GGCATTGACT CGTCTACCCG CCAGAACGTT CAGCACCCTC
ATGAGCATGG AACCCGCGAT TGCCGCCCTA TCTGGGATCC TCTTCCTCGG TGAGCACCTA
TCATTCATAC AGTGGATGGC GCTTATCTTT ATTATCATCG CCTCAATAGG CGCAACGTTG
ACAATAAAAC CCGCAGGTGC GGCCAACGTG ACAACTCAAA CAGAATGA
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| Protein sequence | MTLFSHRSSS FVPVLLIIIS MLSIQSGAAL AKSLFPLIGA TGVTALRLGI GTIILCVIFK
PWRMRFSSNR LPLLVYGITL GGMNFLFYLS LQTVPLGIAV ALEFTGPLAV AMLASRRPID
FLWVFLAVAG LWFLLPLGHN IGNVDLVGAA CAVGAGACWA LYILFGQKAG SNHGPGTVAI
GSCIAALIFC PIGAYYAEST LFSLSILPLG VAVAVLSTAL PYSLEMVALT RLPARTFSTL
MSMEPAIAAL SGILFLGEHL SFIQWMALIF IIIASIGATL TIKPAGAANV TTQTE
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