| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1555 |
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| Symbol | |
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| ID | 8132496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 1811972 |
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| End bp | 1813699 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644864844 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_003017134 |
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| Protein GI | 253687944 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.649141 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGTCAAC TATCAAATAA GGAACGTTCG TTGTTGAGTA TACTGCGTCC TTTCCGGCGC
AGCTTTTGGA GCATTGGGAT TTTCAGCGCC ATCGTTAATC TACTGATGCT GTCGCCTTCT
ATCTATATGC TTCAGGTTTA CGATCGCGTA CTGGCTTCGG GGAATGGTAC TACGCTGCTG
ATGCTTACCC TGCTGATTGC CGGTCTGGGG GTGTTCATGG CTGCGCTCGA ATGGGTGCGC
AGTCTTGTGG TCGTCAGGCT CGGGACCCGG ATCGATCTAC AGCTGAATCA ACAGGTTTTC
AACGCCGCAT TTGAGCGCAA TCTGGAGGCC GGAGAGGCCA AAGCCGGTCA GGCGCTGAAC
GATCTCACGC TATTGCGGCA ATTTATTACG GGCAACTCAC TGTTTGCCTT CTTCGATATC
CCCTGGTTTC CCTTCTTTTT ATTGGTGCTG TTTCTGATCC ACCCGGTTCT CGGTCTGCTT
GCTCTGGGGG GAACCGTGGT TCTGGTGCTG CTGGCGTGGC TGAATCAATA TCTCACCACG
TCGCCTTTGG AAGAGGCAAA CCATGAAGCG CTACAGGCGA CGCATCTTGC GGATACGCAA
CTGCGTAATG CGGAAGTCAT TGAATCGATG GGGATGCTGC CTAATTTACG CCGTCGCTGG
CTGGGACAAC ACTACCGCTT TATTACCTTG CAAAATCTGG CAAGTGAACG GGCTGCGGTT
GTCGGTGCGG CATCAAAACA CGCACGCGTT TTTCTGCAAT CGCTAATGCT CGGTGTGGGG
GCTCTGCTCG CGATTAAGGG TGAAATTACG CCGGGCATGA TGATTGCGGG GTCAATCCTT
GTCGGGCGCG TGCTGAGTCC TATCGATCAG CTTATTGGTA TTTGGAAACC CTTGAGCAGC
GCTCGTCAGG CCTGGCATCG GCTGAGTCGT ATCATGGCAG CTTACCCGCC CAAAGCGGAG
CCCATGGCGT TACCTGCGCC GGTTGGCCAG CTCAACGTCG AGAATGTGCT GTTGCAGACG
CCACAAGGCG CGGCCAGGTT GCAGGATATC CATTTCTCGC TTCAGGCAGG GGAAACGCTG
GCGGTTCTGG GCGCATCGGG TTCAGGAAAA TCGACACTGG CACGCCTGTT GGTGGCAACG
CAAACACCAA CGCGAGGCAA AGTTCGACTG GATGGCGCCG ATCTCAGCCA GGTAGATAAA
ACGGCGTTTG GTCCGGCAAT GGGCTACCTG CCGCAGGATG TGCAACTCTT TAAGGGCACG
CTGGCGGAGA ACATTTCTCG CTTTGGCGAA CATGATGCGG AAAAAATTGT GGCGGCGGCG
AAGCTGGCGG GTGTCCACGA AATGATTCTT AGCCAGCCAC AGGGATATGA CACGCCTCTC
GGCGCCGACG GCAACGGGCT GTCGGGCGGT CAGCGGCAGC GTATCGCGCT GGCGCGGGCA
GTGTATGGCG AACCCTGCTT GCTGGTACTC GATGAGCCGA ACTCCAGCCT TGATAACGAG
GGTGAAATGG CTCTGGCGCA GGCGATTTCG CATCTTCAGA AACGAGGGGC AACGGTGGTA
CTGATTACGC ATCGTCCAGC ATTAACTACG CTGGCGCATA AGATTTTGGT GCTTAATCAG
GGTAGGCAAC AACGCTTTGG GCCTGCGCGC GAGATTCTGA GCGAACTACA GCCGCGTCGT
GCCGCTAATC AGGCACAAAT GACACCCTCT ACCGCTGTCC AGCGGTAA
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| Protein sequence | MSQLSNKERS LLSILRPFRR SFWSIGIFSA IVNLLMLSPS IYMLQVYDRV LASGNGTTLL
MLTLLIAGLG VFMAALEWVR SLVVVRLGTR IDLQLNQQVF NAAFERNLEA GEAKAGQALN
DLTLLRQFIT GNSLFAFFDI PWFPFFLLVL FLIHPVLGLL ALGGTVVLVL LAWLNQYLTT
SPLEEANHEA LQATHLADTQ LRNAEVIESM GMLPNLRRRW LGQHYRFITL QNLASERAAV
VGAASKHARV FLQSLMLGVG ALLAIKGEIT PGMMIAGSIL VGRVLSPIDQ LIGIWKPLSS
ARQAWHRLSR IMAAYPPKAE PMALPAPVGQ LNVENVLLQT PQGAARLQDI HFSLQAGETL
AVLGASGSGK STLARLLVAT QTPTRGKVRL DGADLSQVDK TAFGPAMGYL PQDVQLFKGT
LAENISRFGE HDAEKIVAAA KLAGVHEMIL SQPQGYDTPL GADGNGLSGG QRQRIALARA
VYGEPCLLVL DEPNSSLDNE GEMALAQAIS HLQKRGATVV LITHRPALTT LAHKILVLNQ
GRQQRFGPAR EILSELQPRR AANQAQMTPS TAVQR
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