Gene PC1_1458 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1458 
Symbol 
ID8132397 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp1707493 
End bp1708692 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content53% 
IMG OID644864748 
Productdrug resistance transporter, Bcr/CflA subfamily 
Protein accessionYP_003017040 
Protein GI253687850 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00531988 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTCAGG TTCAGACCCG CCCGGAAAAA ACGCCAGGGC TATTTTTTAT TGCCATTCTC 
AGTGCGCTGA TGGCATTTAC ATCCTTATCG ACAGACATTT ATTTACCTGC CATGCCCGTG
ATGGCGAAAG ATTTACAGGG CAATGCAGAG CTAACCATCA CCGGCTTTTT AATCGGCTTT
TGCATCGCGC AGCTGATTTG GGGGCCGTTA AGCGATCATC TGGGACGCCG GATGCCGCTG
TTTATTGGTA TGGTTCTGTT TATCATCGGC TCTGTCGGCT GCGCCCTGTC TACGGATATG
TCGCAAATCG TTTTTTGGCG AGTCTTTCAG GCGTTGGGCG CGTGTACTGG CCCAATGCTG
GCTCGCGCGA TGATTCGCGA CCTCTTTAGC CGCACGCGCG CAGCGCAAAT GCTCTCGACG
CTCATTATCG TGATGGCGAT TGCGCCCATT GCCGGACCGT TACTCGGCGG GCAGTTAATC
AAAGTAACAT CATGGCATGC CATTTTTTGG CTACTGGCAG TGATTGGTAT CGCGATGCTG
ATGTCATTAC GCTGGCTGCC TGAAACGTTA CCCGAAGACA GACGGGTGAA AGCATCATTG
CCCAGCGCCT TTCGCAACTA TTATGCGCTG CTGACGAACA CCAGCTTCAT GCGTTTCACT
TTATGTCTGA CGTTCTATTA TGTCGCCGCC TACGCTTTTA TTACCGGTTC GGCCTTTGTC
TACATCACCT ACTTCGGTAT TGATCCGCAG CATTACGGCT GGCTATTTGC ACTGAATATC
GTCGGCGTGA TGGGAATGAG CGTGGTCAAT CGTCGTCTGG TTCAGCGCTA CTCGCTAGAA
AAGCTGCTTA AATTTGCCGT ACTGATCGCG ACTGTCGCTT CGTTCATTCT GGCTGTCGGC
GCAAAGCTGC ATATCGGGGG AATAGTGCTG ATTGTGGTCT CGGTGTTCAT CTTCTTCTCG
ATGAACGGCA TCATCGCTGC CACCTCCACC GCCGCCGCGC TTGACGCGGT GCCCAATATT
GCCGGTTCAG CATCAGCACT GATCGGATCG CTACAGTACG GCAGCGGCAT TATCTCTTCG
CTATTGCTTG CGCTACTGAG CGATGGAACA CCGTGGACGA TGGCGTGGAT CATCGCCCTG
TTTACCGCAG CCAGTGCGGT AATTGCGCTG ACTACACGGG AACGAGGAAC TACAGCGTGA
 
Protein sequence
MTQVQTRPEK TPGLFFIAIL SALMAFTSLS TDIYLPAMPV MAKDLQGNAE LTITGFLIGF 
CIAQLIWGPL SDHLGRRMPL FIGMVLFIIG SVGCALSTDM SQIVFWRVFQ ALGACTGPML
ARAMIRDLFS RTRAAQMLST LIIVMAIAPI AGPLLGGQLI KVTSWHAIFW LLAVIGIAML
MSLRWLPETL PEDRRVKASL PSAFRNYYAL LTNTSFMRFT LCLTFYYVAA YAFITGSAFV
YITYFGIDPQ HYGWLFALNI VGVMGMSVVN RRLVQRYSLE KLLKFAVLIA TVASFILAVG
AKLHIGGIVL IVVSVFIFFS MNGIIAATST AAALDAVPNI AGSASALIGS LQYGSGIISS
LLLALLSDGT PWTMAWIIAL FTAASAVIAL TTRERGTTA