Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1458 |
Symbol | |
ID | 8132397 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 1707493 |
End bp | 1708692 |
Gene Length | 1200 bp |
Protein Length | 399 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644864748 |
Product | drug resistance transporter, Bcr/CflA subfamily |
Protein accession | YP_003017040 |
Protein GI | 253687850 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00531988 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTCAGG TTCAGACCCG CCCGGAAAAA ACGCCAGGGC TATTTTTTAT TGCCATTCTC AGTGCGCTGA TGGCATTTAC ATCCTTATCG ACAGACATTT ATTTACCTGC CATGCCCGTG ATGGCGAAAG ATTTACAGGG CAATGCAGAG CTAACCATCA CCGGCTTTTT AATCGGCTTT TGCATCGCGC AGCTGATTTG GGGGCCGTTA AGCGATCATC TGGGACGCCG GATGCCGCTG TTTATTGGTA TGGTTCTGTT TATCATCGGC TCTGTCGGCT GCGCCCTGTC TACGGATATG TCGCAAATCG TTTTTTGGCG AGTCTTTCAG GCGTTGGGCG CGTGTACTGG CCCAATGCTG GCTCGCGCGA TGATTCGCGA CCTCTTTAGC CGCACGCGCG CAGCGCAAAT GCTCTCGACG CTCATTATCG TGATGGCGAT TGCGCCCATT GCCGGACCGT TACTCGGCGG GCAGTTAATC AAAGTAACAT CATGGCATGC CATTTTTTGG CTACTGGCAG TGATTGGTAT CGCGATGCTG ATGTCATTAC GCTGGCTGCC TGAAACGTTA CCCGAAGACA GACGGGTGAA AGCATCATTG CCCAGCGCCT TTCGCAACTA TTATGCGCTG CTGACGAACA CCAGCTTCAT GCGTTTCACT TTATGTCTGA CGTTCTATTA TGTCGCCGCC TACGCTTTTA TTACCGGTTC GGCCTTTGTC TACATCACCT ACTTCGGTAT TGATCCGCAG CATTACGGCT GGCTATTTGC ACTGAATATC GTCGGCGTGA TGGGAATGAG CGTGGTCAAT CGTCGTCTGG TTCAGCGCTA CTCGCTAGAA AAGCTGCTTA AATTTGCCGT ACTGATCGCG ACTGTCGCTT CGTTCATTCT GGCTGTCGGC GCAAAGCTGC ATATCGGGGG AATAGTGCTG ATTGTGGTCT CGGTGTTCAT CTTCTTCTCG ATGAACGGCA TCATCGCTGC CACCTCCACC GCCGCCGCGC TTGACGCGGT GCCCAATATT GCCGGTTCAG CATCAGCACT GATCGGATCG CTACAGTACG GCAGCGGCAT TATCTCTTCG CTATTGCTTG CGCTACTGAG CGATGGAACA CCGTGGACGA TGGCGTGGAT CATCGCCCTG TTTACCGCAG CCAGTGCGGT AATTGCGCTG ACTACACGGG AACGAGGAAC TACAGCGTGA
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Protein sequence | MTQVQTRPEK TPGLFFIAIL SALMAFTSLS TDIYLPAMPV MAKDLQGNAE LTITGFLIGF CIAQLIWGPL SDHLGRRMPL FIGMVLFIIG SVGCALSTDM SQIVFWRVFQ ALGACTGPML ARAMIRDLFS RTRAAQMLST LIIVMAIAPI AGPLLGGQLI KVTSWHAIFW LLAVIGIAML MSLRWLPETL PEDRRVKASL PSAFRNYYAL LTNTSFMRFT LCLTFYYVAA YAFITGSAFV YITYFGIDPQ HYGWLFALNI VGVMGMSVVN RRLVQRYSLE KLLKFAVLIA TVASFILAVG AKLHIGGIVL IVVSVFIFFS MNGIIAATST AAALDAVPNI AGSASALIGS LQYGSGIISS LLLALLSDGT PWTMAWIIAL FTAASAVIAL TTRERGTTA
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