Gene PC1_1401 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1401 
Symbol 
ID8132340 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp1637190 
End bp1638203 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content54% 
IMG OID644864691 
ProductSubstrate-binding region of ABC-type glycine betaine transport system 
Protein accessionYP_003016983 
Protein GI253687793 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4521] ABC-type taurine transport system, periplasmic component 
TIGRFAM ID[TIGR01729] taurine ABC transporter, periplasmic binding protein 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAATA GATTGAGTGT TGTCGGCGTC AGTGGCTTGT TATTAATCAC GACATCTGTA 
CTGGCGGCGG AAAAGCATCC TGATGAGGTG CGCGTAGCCT ACAGTGGCGG TTCGCAGGTA 
TTAGTCTTAG CTAAAGCCGA TGGTTCGTTG CAAAAAGCAT TGGGTGCGCC AGTAAAGTGG 
GTGCAGTTTG CTTCTGGTGC TGATGCGCTG AATTATTTCG CCAGTAATGC AATAGATATC 
GCCAACTTTG GTTCCAGCCC GGCGACAGCC GGTATTGTCA GGAAACTGCC GGTGGAGATC 
GTCGGTGTAT CTGGCGTGAT CGCCACGTAC GAGCGCCTGA TTGCCAAGTC TGGTATCGCC 
ACGCTGAAAG ATATCGAAGG TAAGCGTGTC GCCTATCCGC CAAATTCCAC AGCGCAGTAC 
GCGCTGGAAG CGGCAATCGC GGTGAATAAA CTCGACCGCA GCAAGATTAC CCTTATTCCG 
CTACGTCCGG CTGAGATGGT GGCGGCATGG AAGCGTGGCG ACATTGATGC AGGCTACGTC 
TGGGCGCCAT TCGCGCAGGA GCTGGAAGCC TCCGCCGGGC ATGCGATTTT TGCGACCAAA 
GATCTGCAAA AAGATGGCTA TCTGATTTAC AACAACTATG TGGTTAGAAA GGCTTTTGCC 
CAGCAGTATC CTGAAACGGT GGCGCGCTTC CTGCGCGTAC ACCAACTGAA AGTGGATGAG 
TTCCGTCAGG ATCCGGAAAA AGCGGCGGCG ATTGTGGCAA AAGAAGTCGG TGCGCCCGTT 
ACGACGGCAA CCAATACGCT GTCAGGGCTG GAATACCCGA CGCTGGAACA GCAGGCGACG 
GCACAGTGGC TGGGTGACGG TAGCAACACC GATCGCAGCG GTATCGGTCA GGCAGTCGCA 
AAAACGGCGC ATTTTCTGGA AAGTATCGGC GAAGTTCGCC AACGCGATAT TCCTGCATCG 
TTCGCCGACT CCATTAATTC CTCTTATCTG AAGCAGGCTG CGAAAGGGAA TTAA
 
Protein sequence
MKNRLSVVGV SGLLLITTSV LAAEKHPDEV RVAYSGGSQV LVLAKADGSL QKALGAPVKW 
VQFASGADAL NYFASNAIDI ANFGSSPATA GIVRKLPVEI VGVSGVIATY ERLIAKSGIA 
TLKDIEGKRV AYPPNSTAQY ALEAAIAVNK LDRSKITLIP LRPAEMVAAW KRGDIDAGYV 
WAPFAQELEA SAGHAIFATK DLQKDGYLIY NNYVVRKAFA QQYPETVARF LRVHQLKVDE 
FRQDPEKAAA IVAKEVGAPV TTATNTLSGL EYPTLEQQAT AQWLGDGSNT DRSGIGQAVA 
KTAHFLESIG EVRQRDIPAS FADSINSSYL KQAAKGN