| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1371 |
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| Symbol | |
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| ID | 8132310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 1599259 |
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| End bp | 1600203 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644864661 |
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| Product | Pectate lyase/Amb allergen |
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| Protein accession | YP_003016953 |
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| Protein GI | 253687763 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3866] Pectate lyase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00120054 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTATC CAACAACGAA TCTTACTGGG ATTATTGGTT TTGCAAAAGC AGCAAATGTT
ACCGGAGGAA CAGGCGGTAA AGTTGTTACG GTAAATTCTC TGGCCGATTT TAAATCAGCC
GTCAGCGGTT CCACAAAAAC GATTGTGGTG CTGGGCGCAT CGCTGAAAAC ATCTGCGTTG
ACCAAAGTCG TATTTGGCAG CAATAAAACC ATTGTCGGTT CTTTCGGTGG TGCCAACGTA
TTGACCAATA TTCACCTGCG CGCAGATGCC AGTTCATCTA ACGTTATTTT CCAGAATCTG
GTTTTTAAAC ATGATGTTTC CATCAAGGAT AATGACGATA TCCAGCTGTA TCTGAATTAC
GGTAAAGGAT ATTGGGTGGA TCACTGTTCA TGGCCTGGAC ATACGTGGAG TGATAACGAC
GGTAGCCTCG ATAAGCTGAT TTATGTCGGT GAGAAAGCGG ATTACGTCAC GATCAGTAAC
TGCTTATTCT CAAACCATAA ATATGGCTGC ATCTTTGGTC ATCCAGCAGA TGACAATAAC
AGCGCCTACA ATGGCTATCC GCGTTTGACC ATCTGCCATA ACTATTACGA AAATATTCAG
GTTCGAGCAC CTGGCCTGAT GCGTTATGGT TATTTCCACG TATTCAACAA CTACGTCAAT
AAATTCAACC TGGCCTTTAC GGTTGCGCAG AATGCCAATG TTATTTCTGA ACGCAACGTA
TTTGGCACCG GTGCGGAAAA TAAAGGGATG GTTGACGATA AAGGCAATGG TTCAACCTTT
ACGGATAATG GCAGCTCACC AGCCGCCGTG GCAAGTAAAT CACCTGCCGC TAAATGGACG
GCGTCATCTA ACTATTCATA CAGTTTGATG ACCACGTCAG CGGCGAAATC CTGGGTGGTT
TCTAATTCCG GCGCGCAAAA CAGTGCGCTG AAATTCCCGT CATAA
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| Protein sequence | MAYPTTNLTG IIGFAKAANV TGGTGGKVVT VNSLADFKSA VSGSTKTIVV LGASLKTSAL
TKVVFGSNKT IVGSFGGANV LTNIHLRADA SSSNVIFQNL VFKHDVSIKD NDDIQLYLNY
GKGYWVDHCS WPGHTWSDND GSLDKLIYVG EKADYVTISN CLFSNHKYGC IFGHPADDNN
SAYNGYPRLT ICHNYYENIQ VRAPGLMRYG YFHVFNNYVN KFNLAFTVAQ NANVISERNV
FGTGAENKGM VDDKGNGSTF TDNGSSPAAV ASKSPAAKWT ASSNYSYSLM TTSAAKSWVV
SNSGAQNSAL KFPS
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