| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1368 |
|---|
| Symbol | |
|---|
| ID | 8132307 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1595765 |
|---|
| End bp | 1597342 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644864658 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_003016950 |
|---|
| Protein GI | 253687760 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3851] Signal transduction histidine kinase, glucose-6-phosphate specific |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.672249 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGCCGTC TGCACGTCAT CGGTATGACG CTGTTTTTGG CCTTTTTCTA CAGCCTGACC
TGGCTGGCGC TGTGGACCAT CAGTTTCTAT TTAAGCAACA ACGGCCAGCA GGCAGCGCTG
TTGTTACCGC AAGGGTTACG GCTGGCGTTG ATGATTTTGC TGCCGCGCAA ATACTGGCCG
ACCTTACTGC TTTCCGAAAT CGCTATCCAG AGCTGGCTTA TCAGCGAGCA GCTCATGACG
CGTTCACTGC TACTGCTTTC CCCGTTCCTC AGCCTGATTC CGGCCATCAT CACGCACAAA
ATCTGGCATC GCCATACACT TTATTGGCAA CGCCTGCTGC TATTGCTGGC GGCGCTGACG
CTCAACACGA TTCTGCACGG CATCGCCATT GGCCCTTGGT TGCATTCGCA GCTGACGCAG
ACGCTGCTGG CCACGTTTAC CGGTGGAGTA CTGCTGATTC CGTTCATCTA TCTGCTGTAC
GAATACATCA AGCAGCAGCA CTTGCAGACG CTGCTGGCGC AGGAGATCCC CGATCCGCCA
CTGCGTACCT CGCTGCTGAT TTGGTGTTCG CTGTTTTTTT CTATCGGCGT TTGTCTGCAA
ATGGCGTTCA CACCCGAGAT GGAACGTCTG CTGCTGATCT TCGTTTTTCT GCCCAACGTG
GTGATGGCGT ATAAATTCGG CTGGCAAGGC GGCGTGCTCT CCGCCGTACT CGGCAGCCTG
ATGATTGCCG TCACGCGTCA GGTGAGCGGC GCGTTCGACG ATCTGCGCGA GCTGGAGCTT
TTTCTCTCCA CACAGGCGCT GCTTGGTATT GGGCTGGGGA TCGCTATCAG CCGCCAGCAA
CAGCTGGCAC AGCGGCTACA GCGCTATCGC CAGCAGTTGG AGCAGGAGTT GAAAACCCGA
CGGCGGCTCA TGGAACGCAT CATTCATACC GAAGAGGCCG TACGCAAAGA TATCGCGCGC
GAGCTGCATG ATGACATCGG CCAAAACATC ACCGCGATTC AGATTCAGGC CATGCTGGTA
AAACACAGTG CGCCTACCGA TGCCGCCCAG CACGCGGCCG GACAAATCAG CGAGCTGTCG
CGACGCATTC ACCACACCAC GCGCCAGCTT CTACGCCAAC TACGCCCACC GGTGCTGGAT
GAGATGGTGT TGGATAAAGC GCTGCATCAT CTGGCGGATG AGTTCGCCTT CGCTGCGCGC
GGTATTCAGT TTCAGTTGGA TTATCAGCTC CCCACGCCCC CGCATGATGA CGTGGTGGTT
TTCACTCTTT ACCGGCTGGT GCAGGAACTG CTGAATAACA TCAACAAACA CGCCAGCGCT
ACGCAGATTA TGGTTCGGCT TTCGCAGCAG GATGACATGA TTACGCTCGA TGTCATTGAT
AACGGCGTGG GCATTGCACA AAAAGACAGG GCCAATCCCA CGAGTGGCGG TTTCGGCCTG
CGGGGCATCG AGGAGCGCGT TCAGGCACTG GGTGGCAATT GGCTGGTGAA GGCCGCAACC
CACGGTGAAT CCACCACGCC GCGTGGCACG CACATAATTG TTAACCTGCC CACAAAATTT
AAACAAAAAG ACGATTAG
|
|---|
| Protein sequence | MCRLHVIGMT LFLAFFYSLT WLALWTISFY LSNNGQQAAL LLPQGLRLAL MILLPRKYWP
TLLLSEIAIQ SWLISEQLMT RSLLLLSPFL SLIPAIITHK IWHRHTLYWQ RLLLLLAALT
LNTILHGIAI GPWLHSQLTQ TLLATFTGGV LLIPFIYLLY EYIKQQHLQT LLAQEIPDPP
LRTSLLIWCS LFFSIGVCLQ MAFTPEMERL LLIFVFLPNV VMAYKFGWQG GVLSAVLGSL
MIAVTRQVSG AFDDLRELEL FLSTQALLGI GLGIAISRQQ QLAQRLQRYR QQLEQELKTR
RRLMERIIHT EEAVRKDIAR ELHDDIGQNI TAIQIQAMLV KHSAPTDAAQ HAAGQISELS
RRIHHTTRQL LRQLRPPVLD EMVLDKALHH LADEFAFAAR GIQFQLDYQL PTPPHDDVVV
FTLYRLVQEL LNNINKHASA TQIMVRLSQQ DDMITLDVID NGVGIAQKDR ANPTSGGFGL
RGIEERVQAL GGNWLVKAAT HGESTTPRGT HIIVNLPTKF KQKDD
|
|---|
| |