| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1273 |
|---|
| Symbol | |
|---|
| ID | 8132210 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1482974 |
|---|
| End bp | 1483954 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644864563 |
|---|
| Product | transcriptional regulator, LacI family |
|---|
| Protein accession | YP_003016857 |
|---|
| Protein GI | 253687667 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATTC AAAAAATAGC ACGGATAGCG GGTGTCTCGG TCGCTACCGT TTCTCGGGTG
TTGAATAACA TTGATACCGT GAAACCGCAA AACCGGGAAC GTGTTCTCAA TGCGATAAAA
AGCAGCAATT ATCAGCCGAA CTTACTGGCC CGCCAGCTAC GTACCGCACG CAGCCATATG
CTATTGGTCA TGGTTTCCAA CATTGCCAAC CCCTTCTGCG CCGATGTCGT AAAAGGTATC
GAGTCAGAAG CGGAAGAAAA CGGCTACCGT ATTCTTCTGT GCAATTCAGG TGCCGATATT
GTTCGCGCCC ACTCCAGCCT GCAACTGCTG TCCGGTAAAA TGGTCGATGG CGTGATCACC
ATGGACGCGA TTTCAACGCT TTCTGCGCTT CAGGACATGA TTGGCACCGC ACCTTGGGTG
CAGTGCGCCG AGCATGACGA TACGTCCGCC ATTTCATCTG TTGGTATTGA TAACGCGGAG
GCCTCCCGCT TTGTGATTAA TCACTTTATT GGCAAAGGCC GTCGCCGTAT CGCCATGATT
AACCACGATA TGAATTACCT CTACGCCCAG CAGCGAGAGA AAGGTTATCG CGATGCACTC
GCGGAGAATG CATCTGATTA TGACAAAGTA GAATACGCCA GCACGTTAAG CTATCAGGGT
GGAAAGGCAG CAATGGCGGC GCTGCTTAAC GCGCCGGATC GACCGGATGC CGTCTTTGTG
GTATCCGATA CATTAGCAGC AGGCGCGCTG TCGGCAATCT GTGAGGCAGG GCTAAGTGCC
CCACAGGATA TTGCGGTGAT CGGTTTCGAC GGCTCAGAGC TGGGTTACAT CACGTCCCCC
CAGCTCAGTA CCATTCAGCA GCCGTCCGCG CATATCGGCA GAGAAGCCGT GAAGCTGCTA
TTGCAACAGA TTGACCAGCC TGACAGCAAA ACAGAAAAAC GCTTACTGGA ATGGACGTTT
GTCGAACGGG CATCCAGCTA A
|
|---|
| Protein sequence | MSIQKIARIA GVSVATVSRV LNNIDTVKPQ NRERVLNAIK SSNYQPNLLA RQLRTARSHM
LLVMVSNIAN PFCADVVKGI ESEAEENGYR ILLCNSGADI VRAHSSLQLL SGKMVDGVIT
MDAISTLSAL QDMIGTAPWV QCAEHDDTSA ISSVGIDNAE ASRFVINHFI GKGRRRIAMI
NHDMNYLYAQ QREKGYRDAL AENASDYDKV EYASTLSYQG GKAAMAALLN APDRPDAVFV
VSDTLAAGAL SAICEAGLSA PQDIAVIGFD GSELGYITSP QLSTIQQPSA HIGREAVKLL
LQQIDQPDSK TEKRLLEWTF VERASS
|
|---|
| |