| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1140 |
|---|
| Symbol | |
|---|
| ID | 8132069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 1332587 |
|---|
| End bp | 1333624 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644864422 |
|---|
| Product | lipoprotein |
|---|
| Protein accession | YP_003016724 |
|---|
| Protein GI | 253687534 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3317] Uncharacterized lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTATT CATTACAAAA GTCGATGGTG GCGAAAGTCG TTGGCATATC ACTCGTGATG
CTGCTGGCGG CTTGTTCCTC CGATCAGCGC TATAAGCGTC AGGTGAGTGG CGATGAATCC
TATCTGAAGG CACCGGCGCA GCACGCGCTG AATACGCCAG CCGGGATGAT TTTACCGGTG
CAGAACGGGG ATTATGATAT ACCGCCCGTT ACCCTGAATG GCGCGGTCGG CAAGGAACTG
GATATTCGTC CTCCTGTGCA ACCATTGGCC TTGTTGAATG GTTCCCGCAC CCAGATCTCT
GGAGATACGG CAACGCTGCT GTTAGAAAAC AGTTCGCAAA ACAGCCAGCT CTGGTCTCAG
GTTATCCGCG TGTTGCAAGA CAAAGCGTAC ACCATTGCCA GTCGTCAGGA CGCCAGCCAA
ACGCTGACGA CCGACTGGAT CTCATGGCCG CGTGAAGATG AAAACGTACC GTATCAGGGA
CGTTATCAGA TTTCCGTGCA GCAGCAGGGT TATCAGGTCG CACTGATCGT GAAACTGCTG
GGACTACAGC TGAACGGCCA GCCAGTGACG ACGAGCGATC AGAATCAGCG CTACGCCGGT
CTGATGCTGA ATGCGCTCAG TAATGGTCTG GATGCTCAGG CAACCGCGCG CGAAAACGCA
CTGGCAAACC GCACCATTGG TTCGCTGGAT GTGCAGAGCG GGGCGGATGA CACAGGTCTG
CCACTGCTGA TTGTACGCGG CCCGTACACG GTAGTGTGGG ATCGTCTGCC AACCGCGCTG
AGTAAAATCG GAATGGAAGT TAGCGATCGC AGCCGTCCGC AGGGCTCGGT TTCCGTCAAG
TATAGAGCGC CGAGCGGCGG AACCTGGGAT GATCTGGGCG CGAAAAATCC TGAACTGCCT
AACGGCGATT ACAAATTGCA GGTCGGCGAT TTAGATAACC GCAGCAGTCT GCAATTTATC
GATTCTAAAG GGCATACGCT AACCCAGTCT CAGAACGATG CGCTGGTGGC CGTATTCCAG
GCGGCGTTCA GTAAATAA
|
|---|
| Protein sequence | MSYSLQKSMV AKVVGISLVM LLAACSSDQR YKRQVSGDES YLKAPAQHAL NTPAGMILPV
QNGDYDIPPV TLNGAVGKEL DIRPPVQPLA LLNGSRTQIS GDTATLLLEN SSQNSQLWSQ
VIRVLQDKAY TIASRQDASQ TLTTDWISWP REDENVPYQG RYQISVQQQG YQVALIVKLL
GLQLNGQPVT TSDQNQRYAG LMLNALSNGL DAQATARENA LANRTIGSLD VQSGADDTGL
PLLIVRGPYT VVWDRLPTAL SKIGMEVSDR SRPQGSVSVK YRAPSGGTWD DLGAKNPELP
NGDYKLQVGD LDNRSSLQFI DSKGHTLTQS QNDALVAVFQ AAFSK
|
|---|
| |