| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1070 |
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| Symbol | |
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| ID | 8131999 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1245455 |
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| End bp | 1246648 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644864353 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_003016655 |
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| Protein GI | 253687465 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00558937 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAAA ACAGAAGGCT AACGCCTCTG GCGGCAGTTC TGATGCTTTC TGGCGGCTTA
ATGCTCGCAG GATGTGATGG CGGCAATAAT CAGCAAGGCG GCGCACAGCA GCAGATGCCT
GAAGTGGGTA TTGTCACGTT AAAAACGGAA GCACTGAATG TCATGACCGA GCTGCCGGGC
CGTACAAGTG CTTACCGCAT TGCTGAGGTT CGCCCACAGG TTGGTGGGAT TATCCTCAAA
CGCAACTTCG TTGAAGGGTC GGACGTTAAA GCGGGCGCAT CGCTGTATCA AATCGATCCT
GCGACCTATC AGGCAAGCTA CAACAGCGCC AAAGGTTCAC TCGCTCAGGC TCAGGCTCAG
GCAGAAATTG CCCGTCTGAC CGTTAACCGT TATAAGCCAC TGCTGGGCAC CAACTACGTC
AGCAAGCAGG ATTATGACCA GGCCGTCGCC ACGTCGCGTC AAGCTGATGC TGCCGTTCAG
GCTGCCAAAG CGGCAGTGGA CACCGCACAA ATCAATCTGG CTTACACCAA AGTCAGTTCA
CCTATCGAAG GCCGCGTGGG TAAATCCACG GTAACGGAAG GCGCCTTGGT GGCAACCGGG
CAAGCAACTG CATTAACGAC CGTGCAACAG CTTGATCCGA TTTATGTTGA CGTCACACAG
TCCAGCAACG ATTTCCTGCA ACTGAAAAGA GAGTTGGAAA ACGGTACGCT GAAACAAAGC
GCAGGCAAAG CTAATGTCCG CCTGCTACTG GAAAACGGTA CTGAATATAC CGAGGCAGGT
ACATTGGAAT TCTCTGATGT CACGGTAGAT GAAACCACCG GCTCCATCAC ACTGCGAGCC
ATCTTCCCTA ACCCGCAGCA CAACCTTCTT CCCGGTATGT TTGTACGCGC ACGTCTCGAT
TCCGGCGTTA ACCCGACGGC ATTATTAGTG CCGCAGCAGG GTGTTACTCG CGACCCGCGT
GGCCAGGCTA CCGCTATGGT GGTTGGGGAA GGCGATAAAG TGGAACCCCG TACGCTTACA
ACCAGTAAAG CAGTTGGTGA CAAATGGTTG GTTACCGAAG GCTTGAAAGC GGGCGATCGC
GTTATTGTTA CGGGTCTGCA AAAAATCAGA CCCGGTGCGC AGGTGAAAAC TCAAGAAGTC
GCTCAAGAAA ATCAGCAGGC ACAGCAAGCG CCAGCAGAAC CCGCGAAGTC TTAA
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| Protein sequence | MNKNRRLTPL AAVLMLSGGL MLAGCDGGNN QQGGAQQQMP EVGIVTLKTE ALNVMTELPG
RTSAYRIAEV RPQVGGIILK RNFVEGSDVK AGASLYQIDP ATYQASYNSA KGSLAQAQAQ
AEIARLTVNR YKPLLGTNYV SKQDYDQAVA TSRQADAAVQ AAKAAVDTAQ INLAYTKVSS
PIEGRVGKST VTEGALVATG QATALTTVQQ LDPIYVDVTQ SSNDFLQLKR ELENGTLKQS
AGKANVRLLL ENGTEYTEAG TLEFSDVTVD ETTGSITLRA IFPNPQHNLL PGMFVRARLD
SGVNPTALLV PQQGVTRDPR GQATAMVVGE GDKVEPRTLT TSKAVGDKWL VTEGLKAGDR
VIVTGLQKIR PGAQVKTQEV AQENQQAQQA PAEPAKS
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