| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1069 |
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| Symbol | |
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| ID | 8131998 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1242298 |
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| End bp | 1245426 |
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| Gene Length | 3129 bp |
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| Protein Length | 1042 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644864352 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_003016654 |
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| Protein GI | 253687464 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.542154 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTAAGT TTTTTATAGA TCGACCCATT TTTGCATGGG TACTCGCCAT CATGGTGATG
CTGACGGGGT TGCTGGCAAT TGTTAAATTA CCGATTGCCC AGTATCCGAC GATCGCACCA
CCCGCGATTG ACGTAACAGC AACTTATCCA GGGGCCGATG CATCAACGCT GCAAGATTCC
GTTACGCAGG TTATCGAACA GAATATGAAC GGTATCGATA ACCTGATGTA TATGTCATCA
AGCAGTGACT CTTCCGGTAC AGTTCAGATT ACGCTGACGT TTGAGGCAGG TACGGATCCG
GACATCGCGC AGGTTCAGGT GCAGAATAAA CTGCAACTGG CCATGCCACT GCTGCCGCAG
GAAGTACAGC AGCAAGGGGT TAACGTCCAG AAATCCAGTA GCAGCTTCCT CATGGTTGCC
GCCTTCATCA GTGAAGACGG TAAAATGTCA CAGGAAGATA TCGCTGACTA TGTGGCCGCT
AATGTTAAAG ACCCTATCAG CCGTACATCC GGCGTGGGTG ACGCTCAGCT GTTTGGCTCC
CAGTACGCGA TGCGTATCTG GCTGGATCCG AACAAACTGA ACAACTATCA GTTAACCGCA
GGTGACGTCA CCGCGGCAAT TCGTGTTCAA AACAACCAGA TCGCCGCAGG ACAGTTAGGG
GGCGCACCAC CAGTTCCCGG CCAGCAATTA AATGCCTCGA TCATTGCGCA GACTCGTCTG
AATTCAGCAG AGGAATTTTC TAAAATACTG CTGAAAGTCA ACGCTGATGG GTCCCAGGTT
CGCCTTAAAG ATGTCGCACG CGTTGAGCTG GGCGCAGAAG GCTACGACGT TATAGCGCGT
TTCAATGGTA AACCTGCTGC CGGTATCGGT ATCAAATTGG CAACAGGCGC GAACGCGCTG
GATACGGCAA CTGCGGTAAA AGAGGCACTG ACGAAAGCGG AAGAGTTCTT CCCTGCCGGC
CTGAAAGTTG TTTACCCGTA CGATACAACC CCCTTCGTTA AGATCTCGAT CAACGAAGTA
GTGAAAACGC TGGTGGAAGC CATCGTACTG GTATTCCTTG TGATGTATCT GTTCTTGCAG
AACTTCCGTG CCACGCTGAT CCCAACCATC GCGGTACCTG TCGTCTTGCT GGGGACATTT
GCCATCCTCT CCGCGTTTGG CTATTCCATT AACACCTTGA CGATGTTCGC AATGGTTCTC
GCCATCGGGC TTCTGGTGGA TGATGCCATC GTCGTCGTGG AAAACGTGGA ACGTGTCATG
GCGGAAGAAG GCCTGCCGCC TAAAGAAGCG ACAAAACGTT CCATGGAGCA GATCCAGGGC
GCGTTGGTCG GTATTGCGTT GGTACTGTCC GCGGTATTCG TCCCAATGGC GTTTACCGGT
GGTTCCACAG GGGCAATCTA CCGCCAGTTC TCCATCACTA TCGTTTCTGC GATGGTGCTG
TCGGTGATGG TCGCGTTGAT CCTGACTCCT GCTCTTTGTG CAACGCTGTT AAAACCGATT
GCCAAAGGCG ATCACAGTGA GAAAACAGGC TTCTTCGGCT GGTTCAACAG GCTGTTTGAG
AAAAGCACGC ACCATTACAC CGATAGCGTG GCAAATATCC TGCGTAGCAC AGGCCGTTAT
CTGGTCATCT ATCTGCTGAT TGTTGTGGGT CTGGCGCTGT TGTTCTTACG TCTACCGACT
TCCTTCCTGC CAGATGAAGA TCAGGGGGTT CTCCTGAACA TCGTTCAGCT GCCTTCAGGG
GCAACGCAGG AAAATACCCA AAAAATCATG GACAGAATGA CGCAATACTA TCTCGAAAAT
GAGAAAGGCA ACGTCAAGTC CGTGTTTACC GTAACGGGCT TTGGGTTCTC TGGTCGTGGA
CAAAACGCCG GTCTGGCTTT CGCCAGCCTG AATGACTGGA GTGAACGAAG CGGCGCCGAA
AATAAAGTTA TGGCGATTGC AGGACGAGCA AACGCAGCCT TTAGCCAGTA TAAAGAAGCC
ATGGTTTTCG CAGTCAACCT TCCTGCGATT ATCGAACTGG GTACCGCAAC AGGTTTCGAC
TTCCAGCTGA TTGACCAGGC TAATCTTGGG CACGCAAAAC TGACGGAAGC ACGTAACCAA
CTACTAGGCA TGGCGGCACA ACGCCCTGAT ACCCTGGAAC AAGTTCGTCC TAACGGGATG
GAAGATACAC CGCAGTTCCG TCTCGATATC GATCAGGAAA AAGCACAGGC GCTTGGCGTG
TCGCTGTCGG ATATCAGTTC AACATTGGCA ACCACGCTGG GTGGTTCTTA TGTAAATGAC
TTTATCGATC GCGGTCGCGT GAAGAAAGTG TACGTTCAGG CTGATGCGCC TTTCCGTATG
CTGCCGGATG ACATCAAAAA CTGGTACATC CGCGGTAGCA ACGGACAAAT GGTGCCATTC
TCTGCCTTTA CGCAAAGTCA CTGGGAATAC GGTTCACCGC GTCTGGAACG TTATAACGGC
CAACCATCCA TGCAGATCCA AGGTCAAGCC GCGCCAGGTA AGAGTACTGG TGAAGCCATG
GCATTGATGG AAAGTTTCGT GGCCCAGTTA CCGCAAGGTA TCGGCTACGA ATGGACGGGT
ATGTCCTATC AGGAGCGGTT ATCAGGTAAC CAGGCACCGG CAATCTATGC GATTTCACTG
ATTGTTGTGT TCCTGTGTCT GGCAGCACTT TATGAAAGCT GGTCAATACC GTTCTCCGTC
ATGCTGGTTG TTCCACTGGG GATCATCGGC GCATTGATTG CGGCAAATAT GACAGGTCTT
GAAAACGACG TTTACTTTAA GGTGGGCCTG CTAACAACCA TAGGGCTATC CGCGAAGAAC
GCCATATTGA TCGTCGAATT TGCTAAAGAT CTGATGGAAA AAGAAGGGAA AGGACTGATA
GAAGCAACGC TGGATGCCGT TCGTATGCGT TTGCGCCCAA TCCTGATGAC ATCACTGGCC
TTTATCCTCG GCGTAATGCC ACTGGTAATC AGTAGTGGAG CAGGTTCCGG TGCACAGAAC
GCCGTTGGTA CTGGCGTAAT GGGCGGGATG ATTACCGCAA CCGTGCTGGC TATCTTCTTC
GTTCCCGTGT TCTTTGTGGT TGTCCGCCGT CGCTTCGGCA AAAAAGTAGA CGACACAACA
GCGCACTAA
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| Protein sequence | MAKFFIDRPI FAWVLAIMVM LTGLLAIVKL PIAQYPTIAP PAIDVTATYP GADASTLQDS
VTQVIEQNMN GIDNLMYMSS SSDSSGTVQI TLTFEAGTDP DIAQVQVQNK LQLAMPLLPQ
EVQQQGVNVQ KSSSSFLMVA AFISEDGKMS QEDIADYVAA NVKDPISRTS GVGDAQLFGS
QYAMRIWLDP NKLNNYQLTA GDVTAAIRVQ NNQIAAGQLG GAPPVPGQQL NASIIAQTRL
NSAEEFSKIL LKVNADGSQV RLKDVARVEL GAEGYDVIAR FNGKPAAGIG IKLATGANAL
DTATAVKEAL TKAEEFFPAG LKVVYPYDTT PFVKISINEV VKTLVEAIVL VFLVMYLFLQ
NFRATLIPTI AVPVVLLGTF AILSAFGYSI NTLTMFAMVL AIGLLVDDAI VVVENVERVM
AEEGLPPKEA TKRSMEQIQG ALVGIALVLS AVFVPMAFTG GSTGAIYRQF SITIVSAMVL
SVMVALILTP ALCATLLKPI AKGDHSEKTG FFGWFNRLFE KSTHHYTDSV ANILRSTGRY
LVIYLLIVVG LALLFLRLPT SFLPDEDQGV LLNIVQLPSG ATQENTQKIM DRMTQYYLEN
EKGNVKSVFT VTGFGFSGRG QNAGLAFASL NDWSERSGAE NKVMAIAGRA NAAFSQYKEA
MVFAVNLPAI IELGTATGFD FQLIDQANLG HAKLTEARNQ LLGMAAQRPD TLEQVRPNGM
EDTPQFRLDI DQEKAQALGV SLSDISSTLA TTLGGSYVND FIDRGRVKKV YVQADAPFRM
LPDDIKNWYI RGSNGQMVPF SAFTQSHWEY GSPRLERYNG QPSMQIQGQA APGKSTGEAM
ALMESFVAQL PQGIGYEWTG MSYQERLSGN QAPAIYAISL IVVFLCLAAL YESWSIPFSV
MLVVPLGIIG ALIAANMTGL ENDVYFKVGL LTTIGLSAKN AILIVEFAKD LMEKEGKGLI
EATLDAVRMR LRPILMTSLA FILGVMPLVI SSGAGSGAQN AVGTGVMGGM ITATVLAIFF
VPVFFVVVRR RFGKKVDDTT AH
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