Gene PC1_1049 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1049 
SymbolclpX 
ID8131978 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp1221541 
End bp1222815 
Gene Length1275 bp 
Protein Length424 aa 
Translation table11 
GC content51% 
IMG OID644864332 
ProductATP-dependent protease ATP-binding subunit ClpX 
Protein accessionYP_003016634 
Protein GI253687444 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1219] ATP-dependent protease Clp, ATPase subunit 
TIGRFAM ID[TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00100096 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGATA AGCGCAAAGA CGGTTCAGGA AAGTTACTGT ACTGCTCTTT TTGCGGCAAG 
AGCCAGCATG AAGTGCGTAA GCTGATTGCC GGGCCGTCGG TGTATATCTG CGATGAATGT
GTTGACTTGT GTAACGACAT TATTCGCGAA GAAATTAAAG AAGTGGCGCC CCATCGTGAG
CGCAGTGCGT TGCCGACGCC ACACGAAATT CGCCGCCACC TTGACGATTA TGTTATTGGT
CAAGAGCAGG CCAAGAAGGT GTTGGCCGTT GCGGTGTATA ACCACTACAA ACGCTTGCGT
AATGGTGACA GCAGCAACGG GATCGAACTG GGTAAAAGTA ACATCCTGCT GATTGGTCCT
ACCGGGAGCG GTAAAACGCT GCTGGCTGAA ACGCTGGCGC GCTTCCTGGA TGTACCATTC
ACCATGGCGG ATGCCACGAC GCTGACCGAA GCAGGTTACG TCGGTGAAGA CGTTGAAAAC
ATCATTCAGA AGCTGTTGCA GAAGTGTGAT TACGATGTGC AGAAAGCACA GCGTGGGATT
GTCTACATCG ATGAAATCGA CAAGATTTCT CGTAAGTCAG ACAACCCGTC GATCACCCGC
GATGTTTCAG GTGAAGGTGT ACAGCAGGCG TTGCTGAAGC TTATCGAAGG GACGATTGCT
GCTGTTCCGC CGCAGGGTGG GCGCAAGCAT CCGCAACAGG AGTTCTTGCA GGTTGATACC
TCTAAGATCC TCTTTATCTG CGGCGGTGCG TTTGCAGGAC TGGACAAAGT GATCGAGCAA
CGTACCGATA CAGGTCGCGG CATCGGCTTT AATGCAACGG TTAAAGGATC GGCTGACAAA
GCAACAGAAG GCGAGCTGTT AAGCAATGTT GAACCGGGTG ACTTGATTAA ATTCGGTTTG
ATTCCTGAGT TTATCGGCCG TCTGCCAGTG GTTGCTACGC TGAGAGAGCT GAGCGAAGAA
GCGTTGATTC AGATTCTGCG TGAGCCTAAA AATGCGTTGA CCAAACAGTA TCAGGCGTTG
TTCAACCTGG AGGGCGTTGA ACTGGAATTC CGCGATGAAG CGTTGACGGC GATTGCCAAG
AAAGCGATGG CGCGTAAAAC CGGTGCACGT GGCCTGCGTT CTATCGTTGA AGCCGCTCTG
CTGGATACCA TGTATGACCT GCCATCGCTG GAAAGCGTGG ACAAAGTCGT CATTGACGAA
TCTGTTATTG CGGGTCAATC CGAGCCATTG CTGATCTATG GCAAGCATGA AACCCAGCAA
GCTTCTGGCG AATAA
 
Protein sequence
MTDKRKDGSG KLLYCSFCGK SQHEVRKLIA GPSVYICDEC VDLCNDIIRE EIKEVAPHRE 
RSALPTPHEI RRHLDDYVIG QEQAKKVLAV AVYNHYKRLR NGDSSNGIEL GKSNILLIGP
TGSGKTLLAE TLARFLDVPF TMADATTLTE AGYVGEDVEN IIQKLLQKCD YDVQKAQRGI
VYIDEIDKIS RKSDNPSITR DVSGEGVQQA LLKLIEGTIA AVPPQGGRKH PQQEFLQVDT
SKILFICGGA FAGLDKVIEQ RTDTGRGIGF NATVKGSADK ATEGELLSNV EPGDLIKFGL
IPEFIGRLPV VATLRELSEE ALIQILREPK NALTKQYQAL FNLEGVELEF RDEALTAIAK
KAMARKTGAR GLRSIVEAAL LDTMYDLPSL ESVDKVVIDE SVIAGQSEPL LIYGKHETQQ
ASGE