| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1042 |
|---|
| Symbol | |
|---|
| ID | 8131971 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1212469 |
|---|
| End bp | 1214460 |
|---|
| Gene Length | 1992 bp |
|---|
| Protein Length | 663 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644864325 |
|---|
| Product | cytochrome o ubiquinol oxidase, subunit I |
|---|
| Protein accession | YP_003016627 |
|---|
| Protein GI | 253687437 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
|---|
| TIGRFAM ID | [TIGR02843] cytochrome o ubiquinol oxidase, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.190095 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGGAA AACTTACACT CGATGCGGTT CCGTACCACG AACCCATTAT TATGGTCACC
GTGGCGGCGA TCATCGTTGG CGGCCTTGCG CTGCTGGCGG CAATAACCTA TTTAGGCAAG
TGGAAATGGC TGTGGGCCGA GTGGTTCACC TCCGTCGATC ATAAGAAAAT CGGTATCATG
TACATCATCG TCGGTCTGGT GATGATGATT CGTGGCTTTG CCGATGCCAT CATGATGCGC
GGCCAGCAGG TTCTGGCCTC TGCCGGGCAA GAAGGCTTCC TAAACGCCCA CCACTACGAT
CAGATTTTCA CCGCGCACGG TGTAATCATG ATCTTCTTCG TGGCGACACC GTTCGTTGTT
GGTCTGATGA ACCTTGCGGT TCCTTTGCAG ATCGGTGCGC GTGACGTTGC TTTCCCATTC
CTGAACTCCC TCAGCTTCTG GCTGTTTGTC GTCGGCGTTA TCTTGATCAA CCTCTCTCTC
GGGGTCGGTG AATTCGCGCA GACTGGCTGG GTGGCGTATC CGCCGCTTTC AGGAAAGGAG
TACAGTCCCG GCGTTGGGGT CGATTATTGG ATATGGAGTC TACAGATATC CGGTATTGGT
ACCACGCTGA CTGGCGTTAA CTTCTTCGCG ACGATTCTGA AGATGCGTGC GCCAGGCATG
ACTCTGATGA AAATGCCGGT ATTTACTTGG ACAGCGCTGT GTACCAACGT GCTGATCATT
GCCGCATTCC CAATTTTGAC CGTTACCATT GCGCTGCTGA CGCTTGACCG TTACCTCGGC
ACCCATTTCT TTACCAACGA TATGGGTGGC AACATGATGA TGTACATCAA CCTGATTTGG
GCATGGGGTC ATCCTGAGGT TTACATTCTG GTACTGCCGA TCTTTGGCGT TTACTCCGAA
GTGGTTGCCA CCTTCTGTAA AAAACGTCTG TTTGGCTACA CCTCACTGGT ATGGGCTACT
ATCGCGATTA CGGTTCTGTC GTTCATCGTT TGGTTGCACC ACTTCTTTAC CATGGGGTCC
GGCGCGAACG TCAACGCCTT CTTCGGTATA GCCACCATGA TTATTTCAAT CCCAACCGGG
GTTAAAATCT TCAACTGGCT GTTCACCATG TATCAAGGTC GTATTCAGTC TCACTCCACG
ATGCTGTGGA CCACGGGCTT CATCATCACC TTTACCATCG GTGGGATGAC CGGGGTACTG
CTGGCCGTAC CAGGCGCAAA CTTTGTCCTG CACAACAGTC TGTTCCTGAT TGCTCACTTC
CATAACGTGA TCATCGGCGG CGTAGTGTTT GGTTGCTTCG CAGGTATTAC TTACTGGTTC
CCGAAAGCCT TTGGTTTCAC CCTGAACGAA ACCTGGGGTA AACGCGCGTT CTGGTTCTGG
ATTATCGGCT TCTTCGTTGC CTTTATGCCG CTGTATATTC TCGGCTTTAT GGGAATGACG
CGTCGTCTGA GCCAACAAAT CAACCCTGAA TTCCACGCCT TGCTGGTTGT GGCATCCATC
GGTGCAGTGC TGATCGGTAT CGGTGTGCTG TGTCAGGTGA TCCAGTTCTA CGTCAGTATC
CGTGACCGTC ACCAGAACCG TGACCTGACG GGCGATCCGT GGGGTGGACG TACGCTGGAG
TGGGCAACCT CTTCTCCTGC GCCGTTCTAC AACTTCGCTG TCGTGCCGCA TGTTGACGAG
CGTGATGCGT TCTGGGAAGC GAAAGAGAAA GGTGAAGCTT ACAAGCGCCC TGCCAGCTAT
GAAGAGATTC ACATGCCGAA GAACACCGGC GCTGGTGTGA TTATCTCCGC ATTCAGCCTG
GTATTCGGTT TTGCCATGAT CTGGCATATC TGGTGGCTGG CCATCGCTGG CTTCGCTGGC
ATGATTGTGA CCTGGATTGT GCACAGCTTT AATCAAGACG TGGATTACTA CGTGCCGGTT
AAAGAAATTG AGCAAATTGA GAATCAGAAT TTTGATCAAC TCAGTAAGGC AGGCGTGAAA
CATGTCAACT GA
|
|---|
| Protein sequence | MFGKLTLDAV PYHEPIIMVT VAAIIVGGLA LLAAITYLGK WKWLWAEWFT SVDHKKIGIM
YIIVGLVMMI RGFADAIMMR GQQVLASAGQ EGFLNAHHYD QIFTAHGVIM IFFVATPFVV
GLMNLAVPLQ IGARDVAFPF LNSLSFWLFV VGVILINLSL GVGEFAQTGW VAYPPLSGKE
YSPGVGVDYW IWSLQISGIG TTLTGVNFFA TILKMRAPGM TLMKMPVFTW TALCTNVLII
AAFPILTVTI ALLTLDRYLG THFFTNDMGG NMMMYINLIW AWGHPEVYIL VLPIFGVYSE
VVATFCKKRL FGYTSLVWAT IAITVLSFIV WLHHFFTMGS GANVNAFFGI ATMIISIPTG
VKIFNWLFTM YQGRIQSHST MLWTTGFIIT FTIGGMTGVL LAVPGANFVL HNSLFLIAHF
HNVIIGGVVF GCFAGITYWF PKAFGFTLNE TWGKRAFWFW IIGFFVAFMP LYILGFMGMT
RRLSQQINPE FHALLVVASI GAVLIGIGVL CQVIQFYVSI RDRHQNRDLT GDPWGGRTLE
WATSSPAPFY NFAVVPHVDE RDAFWEAKEK GEAYKRPASY EEIHMPKNTG AGVIISAFSL
VFGFAMIWHI WWLAIAGFAG MIVTWIVHSF NQDVDYYVPV KEIEQIENQN FDQLSKAGVK
HVN
|
|---|
| |