| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0949 |
|---|
| Symbol | |
|---|
| ID | 8131878 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 1098346 |
|---|
| End bp | 1100775 |
|---|
| Gene Length | 2430 bp |
|---|
| Protein Length | 809 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644864233 |
|---|
| Product | outer membrane protein assembly factor YaeT |
|---|
| Protein accession | YP_003016535 |
|---|
| Protein GI | 253687345 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
|---|
| TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00135315 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATCA AAAAGTTGCT CATAGCGTCG CTGCTGTTCA GCAGCGCAAC CGTATACGGT
GCAGACGGGT TCGTAGTGAA GGACATTCAT TTCGAGGGCC TGCAAAGGGT TGCCGTCGGA
GCGGCACTAC TCAGTATGCC AGTCCGCGTT GGTGATACCA TCGGCGACGA TGATATCGGT
AACACCATCC GTGCCTTGTT TGCGACCGGA AATTTTGAAG ATGTTCGCGT CCTGCGCGAT
GGCGGCACCC TGATTGTGCA GGTGAAAGAA CGTCCGACAA TCGCCAGCGT CACGTTTTCC
GGCAATAAGT CCGTCAAAGA CGACATGCTG AAAGAAAACC TGGAGGCCTC TGGCGTGCGC
GTCGGTGAAG CGTTAGACCG CACCGCGCTC ACCAGCATCG AAAAAGGACT GGAAGATTTC
TACTACAGCG TGGGTAAATA TAGTGCGTCG GTTAAAGCTG TTGTCACGCC ACTCCCGCGT
AACCGCGTAG ACCTGAAACT GGTCTTCACG GAAGGCGTTT CCGCCAAGAT CCAACAGATT
AATATTGTCG GTAATAAAGC GTTCAGCTCC GACGAATTGA TCTCCCGTTT CCAACTGCGT
GATGAAGTGC CGTGGTGGAA CGTGGTTGGC GATCGTAAAT ATCAGAAACA AAAACTGTCT
GGCGACTTGG AAACTCTGCG GAGTTTCTAT CTGGATCGCG GCTATGCGCG TTTCAATATT
GATTCCACAC AGGTAAGCCT GACGCCAGAT AAAAAAGGCA TCTACATCAC CATCAACATG
ACGGAAGGCG AGCAGTACAA GCTGTCCGGC GTGACGGTGA AAGGCAATCT GGCTGGTCAC
TCTGCGGAAA TTGAAGGGCT GACGAAGATT GAACCGGGTG AACTCTACAA CGGGACGAAA
GTGACCCGGA TGGAAGAGGA CATCAAGAAG CTGCTGGGTC GTTATGGCTA TGCCTATCCG
CGCGTGGTAA CACAGCCGGA AATTAATGAT GCAGACAAGA CGGTGAGATT AAACATCAAC
GTTGATGCCG GTAACCGTTT CTATGTGCGT CATATCCGCT TTGACGGTAA CGACACGTCT
AAAGACGCTG TCCTGCGCCG TGAAATGCGC CAGATGGAAG GTGCCTGGTT AGGCAACGAT
CTGGTTGAAC AGGGCAAAGA GCGTCTAAAT CGACTGGGAT TCTTTGAAAG CGTTGATGTA
GAAACGCAGC GCGTTCCCGG CGTGGCCGAT CAGGTTGATG TAACGTATAA GGTCAAAGAG
CGTAATACGG GTACCTTCAA CTTTGGTGTC GGTTTCGGTA CCGAAAGTGG CGTGAGTTTC
CAGGCTGGGG TTCAGCAGGA TAACTGGCTG GGAACGGGTA ACTCCGTTGG TATCAGCGGG
ACGAAAAACG ACTACCAGAC GTATGTCGAA CTGTCACTGA CCGACCCGTA CTTTACCGTC
GACGGCGTTA GCCTCGGTGG CCGCATTTTC TATAACAAAT TTGAGGCGTC CGACGCCGAT
CTGTCTGACT ATACCAACGT GAGTTATGGC GTTGGCAGCA CGCTGGGCTT CCCGATCAAC
GAGAATAACT CACTGCGTGT CGGTCTGGAT TATGTACATA ACGATCTGTC GGATATGAGA
CCGCAGGTGG CGATGTGGCG TTATCTGGAT TCTGTGGGAG TTAATCCCGC AGTGGTTCAG
GAAGGTAATA AATCTAGCGC GGATTTCAAA GCGAACGATT TCTTCCTGAA TACCGGATGG
TCGTATAACA ATCTGGATCG CGGCTACTTC CCGACAAAAG GAACGCGTGC GTCGGCGAAT
GCCAAGATCG CCGTGCCGGG TTCGGATAAC GAATACTACA AGCTGACGTT TGATTCGGCG
AGCTACTACC CGTTGACTGA CAGCGGTAAA TGGGTGGTGA TGGGCCGTAC GCGTGCGGGC
TTTGCTGACG GCCTTGGCGG TAAAGAAGTG CCGTTCTACG ACAACTTCTA TGCTGGTGGT
TCCAGTACGG TGCGTGGCTT CCAGTCGAAC ACGATTGGTC CTAAAGCGGC GTATTACAAA
TGTGCTGTGG GCGCAACGTC TTATTCCAAT TGCCCGATTG ATTCAACCAA TCTGGATGAT
GCGGTGGGCG GTAATGCGAT GGCGGTGCTG AGTGCGGAAC TGATCGTGCC GACGCCGTTT
ATCAGCGATA AATACGCGAG TTCCGTCCGT ACTTCCTTCT TTGTTGACGG TGGTACGGTA
TGGGATACCA ACTGGGAAAA TACGCCTGCA ACGATTGCCG CAGGCGTACC GGATTACAGC
AAGGCGAGCA ACTTCCGTGT TTCCAGCGGT ATCGCGTTGC AATGGATGTC TCCGCTTGGG
CCATTGGTCT TCTCCTATGC CCAGCCGGTT AAAAAGTACG ATGGAGACAA GTCGGAACAA
TTCCAGTTTA ACATTGGCAA AACCTGGTAG
|
|---|
| Protein sequence | MAIKKLLIAS LLFSSATVYG ADGFVVKDIH FEGLQRVAVG AALLSMPVRV GDTIGDDDIG
NTIRALFATG NFEDVRVLRD GGTLIVQVKE RPTIASVTFS GNKSVKDDML KENLEASGVR
VGEALDRTAL TSIEKGLEDF YYSVGKYSAS VKAVVTPLPR NRVDLKLVFT EGVSAKIQQI
NIVGNKAFSS DELISRFQLR DEVPWWNVVG DRKYQKQKLS GDLETLRSFY LDRGYARFNI
DSTQVSLTPD KKGIYITINM TEGEQYKLSG VTVKGNLAGH SAEIEGLTKI EPGELYNGTK
VTRMEEDIKK LLGRYGYAYP RVVTQPEIND ADKTVRLNIN VDAGNRFYVR HIRFDGNDTS
KDAVLRREMR QMEGAWLGND LVEQGKERLN RLGFFESVDV ETQRVPGVAD QVDVTYKVKE
RNTGTFNFGV GFGTESGVSF QAGVQQDNWL GTGNSVGISG TKNDYQTYVE LSLTDPYFTV
DGVSLGGRIF YNKFEASDAD LSDYTNVSYG VGSTLGFPIN ENNSLRVGLD YVHNDLSDMR
PQVAMWRYLD SVGVNPAVVQ EGNKSSADFK ANDFFLNTGW SYNNLDRGYF PTKGTRASAN
AKIAVPGSDN EYYKLTFDSA SYYPLTDSGK WVVMGRTRAG FADGLGGKEV PFYDNFYAGG
SSTVRGFQSN TIGPKAAYYK CAVGATSYSN CPIDSTNLDD AVGGNAMAVL SAELIVPTPF
ISDKYASSVR TSFFVDGGTV WDTNWENTPA TIAAGVPDYS KASNFRVSSG IALQWMSPLG
PLVFSYAQPV KKYDGDKSEQ FQFNIGKTW
|
|---|
| |