| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0945 |
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| Symbol | |
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| ID | 8131874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 1093909 |
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| End bp | 1095105 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644864229 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_003016531 |
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| Protein GI | 253687341 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00703512 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGCAAC TGACAATTCT TGGTTCCACT GGCTCTATCG GCGTCAGTTC TCTGGCAGTC
ATTAAAGCCA ATCCCGATAA GTTTGCTGTA CGCGCGTTAT CTGCCGGGTA CAACGTCAAG
CTGATGCTGG AGCAGTGTCT CACTTTCCAA CCTGCCTACG CCTCAATGGC CGATGAAGTT
TCTGCAACAG CTCTGCGCCA ACAGTTGGCG GAATACGGTT GCAAAACAGA GGTTTTGGCG
GGGGAACAAG CGGCGTGTGA CCTTGCTGCA TTGGATGGTG TCGATCAGGT CATGGCCGCG
ATTGTGGGGG CAGCAGGATT ATTGCCGACG CTGGCGGCAA TCCATGCCGG AAAACAGGTC
TTGTTGGCGA ATAAAGAATC ACTGGTTACC TGTGGACGTC TCTTTATGGA CGCCGTAGCG
CAAAGTGGCG CACAGCTTTT ACCGATTGAT AGCGAACATA ATGCGATTTT TCAGAGTTTA
CCTGAGCAAA TTCAGCGTCA ATTAGGCTAC GCTTCATTGT CGCAGAATGG TGTCGAACGG
ATTATTTTGA CTGGGTCTGG CGGACCGTTT CGTGAGACAG CAGTGTCGGC GTTGGCGGAC
ATGACGCCGG ATCAGGCGTG TGCACATCCA AACTGGTCAA TGGGGCGCAA AATTTCGGTT
GATTCCGCCA CGATGATGAA CAAAGGGTTG GAATATATCG AAGCGCGCTG GCTGTTTAAC
GCTTCTGCCG AGCAGATGGA AGTCATCATT CATCCGCAGT CAGTGATTCA CTCGATGGTG
CGTTACCGTG ATGGCAGCGT TCTGGCACAG CTAGGATCGC CCGATATGCG TACGCCGATT
GCTCATGCGA TGGCTTATCC CGAGCGTGTG ACATCTGGCG CAAAAGCGTT AGATTTTTGC
CAGATTGGTG CGCTGACATT TTTGGCACCG GATTATGCGC GCTATCCTTG TTTGCAGTTG
GCAATTGATG CCTGTAATCA GGGTCAGTCG GCCACGACGG CATTGAATGC CGCGAATGAA
ATTGCGGTAG CCGCATTTTT GCAGTCGCAG ATTCGCTTTA CGGATATTGC GGCGGTAAAT
CGACATGTTA TTGAACAACT TACATTACCA GAGCCCGACA GTGTTGATGA TGTTCTTTAC
ATCGATCGCT GGGCCAGACA GGCCGCAACA CAGATCCTGA CACACTACGC GCGATAG
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| Protein sequence | MKQLTILGST GSIGVSSLAV IKANPDKFAV RALSAGYNVK LMLEQCLTFQ PAYASMADEV
SATALRQQLA EYGCKTEVLA GEQAACDLAA LDGVDQVMAA IVGAAGLLPT LAAIHAGKQV
LLANKESLVT CGRLFMDAVA QSGAQLLPID SEHNAIFQSL PEQIQRQLGY ASLSQNGVER
IILTGSGGPF RETAVSALAD MTPDQACAHP NWSMGRKISV DSATMMNKGL EYIEARWLFN
ASAEQMEVII HPQSVIHSMV RYRDGSVLAQ LGSPDMRTPI AHAMAYPERV TSGAKALDFC
QIGALTFLAP DYARYPCLQL AIDACNQGQS ATTALNAANE IAVAAFLQSQ IRFTDIAAVN
RHVIEQLTLP EPDSVDDVLY IDRWARQAAT QILTHYAR
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