| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0938 |
|---|
| Symbol | dapD |
|---|
| ID | 8131867 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1085641 |
|---|
| End bp | 1086468 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644864222 |
|---|
| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
|---|
| Protein accession | YP_003016524 |
|---|
| Protein GI | 253687334 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
|---|
| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0442548 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACCAAC AACTACAGAA CATCATTGAG ACGGCTTTCG AGCGCCGCGC TGAAATCACT
CCGGCAAACG CAGATACCGT TACGCGTGAA GCCGTCAATC AGGCTATCAG CCTGCTGGAT
AGCGGCGCCC TGCGCGTTGC AGAGAAAATC GACGGCCAGT GGGTTACCCA TCAGTGGCTG
AAGAAAGCCG TACTGCTCTC TTTCCGTATT AACGACAACC AGGTGATGGA AGGTTCGGAA
ACGCGTTATT ACGACAAAGT GCCGATGAAG TTTGCGAACT ATGACGAAGC CCGCTTCCAA
CGTGAAGGGT TCCGTGTAGT GCCGCCAGCA AGCGTGCGTC AGGGTGCGTT TATTGCTCGT
AATACCGTAC TGATGCCGTC TTACGTCAAC ATCGGTGCAT ACGTTGATGA AGGCTCAATG
GTGGATACCT GGGCAACCGT TGGTTCTTGT GCCCAGATCG GTAAAAACGT TCACCTGTCC
GGCGGCGTAG GCATCGGCGG TGTTCTGGAG CCGCTGCAGG CGAACCCGAC CATCATCGAA
GACAACTGCT TCATCGGCGC ACGTTCTGAA GTGGTAGAAG GCGTGATCGT GGAAGAAGGC
TCCGTTATCT CCATGGGCGT GTTCATCGGC CAAAGCACCC GCATTTACGA TCGTGAAACT
GGCGAAATCC ACTATGGTCG CGTACCGGCA GGCTCCGTTG TGGTTTCCGG CAACCTGCCG
TCCAAAGATG GTAGCTACAG CCTGTACTGT GCCGTTATTG TGAAGAAAGT GGATGCGAAA
ACCCGCGGCA AAGTGGGTAT CAATGAGTTA TTACGCACCA TCGACTAA
|
|---|
| Protein sequence | MHQQLQNIIE TAFERRAEIT PANADTVTRE AVNQAISLLD SGALRVAEKI DGQWVTHQWL
KKAVLLSFRI NDNQVMEGSE TRYYDKVPMK FANYDEARFQ REGFRVVPPA SVRQGAFIAR
NTVLMPSYVN IGAYVDEGSM VDTWATVGSC AQIGKNVHLS GGVGIGGVLE PLQANPTIIE
DNCFIGARSE VVEGVIVEEG SVISMGVFIG QSTRIYDRET GEIHYGRVPA GSVVVSGNLP
SKDGSYSLYC AVIVKKVDAK TRGKVGINEL LRTID
|
|---|
| |