| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0810 |
|---|
| Symbol | |
|---|
| ID | 8131735 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 945282 |
|---|
| End bp | 947522 |
|---|
| Gene Length | 2241 bp |
|---|
| Protein Length | 746 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644864094 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_003016400 |
|---|
| Protein GI | 253687210 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCGT TCAAACTTTC TGGGGTATGT TTGTCCGTCG TCGGCGCATT ACTGGCAGGT
TCCGCGCTGG CGGAGGACGC GACCAATGTC GGCACCATCA ACGTACAAGG GCAGCCGCTC
GGCGCAGGAT TAATGGTTCA GGAAGACAGC GCCAAATCGC GTTCGACCGT GACAAAAGAC
GCCCTGGATA AGATGCCCGC AGCAGGCAAC GCCATTGATA AACTGAAATA TACTGCAGGC
CTGAACGTCA GCAGTAACGA CGCCAGCGGC TTAAGCGGCG TCAGCTATAC CATGCGCGGC
ATGAGCGCGG ATCAGGTCGG CCTGTCATCA GATGGCATTC CCGTCAATGA TTCCGGCGAC
TACGCCGTGT ACCCGAACGG CATGGGCGAC CCGGAAAACC TGGAACAGAT TTTTGTCACC
CAGGGCTCGT CAGAAATGGA CGGCCCGCAC ATCGGTGCCA GCGGCGGCAA CATCGGGCTG
GTTTCCCACC GTCCGGCGAA AGATTTTGGC GGCTTCGTTA AGCAAACGTT CGGCAGCAAC
AACCTCAGCA AGACCTTCGC ACGTCTGGAA ACCGGTAAAC ACAACGGCTT CAGCAGTTGG
CTCTCCTACT CGTATACCGA CTCCGACAAA TGGCGTGGCG CAGGATATTC CCGTGCCGAT
AAAGTCGAAT GGAACGGACT GTATGAACAT GAAAATGGCC ACAGCAGCAG CCTGATTGTG
AAATACAATC AGCAAGATAC CATCAACTAC TCGACGCTGA GCAAACGGCA GTTCGAGCAA
AACGGGCGCA AGATGGATTA CGCCACGACG CCGGTTTACA ACAGCCGTGG ACAGATTTCT
CAATACTACA AAATTAACCG CAATAACTTC GAAACGCTGA ATGTCACCTT CACCCAGAAA
TTACAGCTGC GCGATAATCT GGCTTTGACC TTACAACCCT ATTATTTCTC GACGAACGGC
GGCAGCCACG GTAGCGGAAG CGCCAGCGTG TTATCCGCAA CGTCGGATCG CGCCGGTAAC
TACGACCTTA GCAACCTGAC CTCCAACACC TACTACCGCC CGTCGTGGAC GGAAACCTGG
CGGCCTGGTA TCACCACCAA GCTGAAATGG GATCTTAACG ACGAGCATAG CCTGGATATC
GGTTACTGGT TTGAGCGTGC TCGCCAGCGC CAAACGCAGC CATTCATTCC GATTAAGAGC
GACGGCACCC CGGCTAACAT CTCCGGCAAA CCCGGCGATG CGGATCAAAT CACCGACGCG
AACGGAAAGG TGGTTCAAGG CCGTAACCAG TTTACCGTCA CGCCAGCCCA TAAAATCTGG
GTACAGGACA CCTGGTTCTT CTCACCAGAA TGGACGTTCA GCGGTGGTCT GGCCTATCAG
CACGTAGAAC GTGACGGGAC TAACCTCGGC AGTTTGTATA ACGTCGCAGA GAAAAAGAAC
AAGAAATACC ACGAGTTCCT GCCTAGCTTT AACGCGGCCT ACCGCATCAA TACCGAAAAT
CAGGTGTTCT ATAACATCAC GCGTAACATG CGTACCCCGC CTAACTACGT CTTGTACAAC
GTTGGCGATT CCATCAATAC CAAACCTGAG CTGAGCTGGA ATCAGGAACT CGGCTGGCGC
TTCCAGGACG AGGACATGCT GCTGAGCGCC TCGCTGTTCT TTATCCAGTT TACCGACCGT
CAGATCTCCA GCCGTGACGC CAACGGCGAT TACGAAATGA TCAACGCCGG GAAAGTGGAA
AACAAAGGGC TGGAACTGGA GTGGAGCGGC AAGCTGCCTC ATAACTTCAA CTACTTCGCC
GCTTATACCT ACACCGATAC CGAGCAGAAA AACAATCTCG CCACCAGCGG TAGCCAGCTC
CCCACCACGG GCAAGCAGGT CGCCAACGCA CCGAAAAACA TGCTCAACCT CGGAGTGGGC
TATGACGACG GTCTCTACTA TGCCGGCGTA AACAGCCGCT ATGTTGGCTC GTTCTACGGC
GACATGACCA ATGACGAGAA GATAGGCGGA CGTACCGTTT TCGATCTCAG CGCCGGCGTC
TATCTGCCAG TGGATAAGAA GATCGTGAAA AGCGCCACCT TACGCTTTGG CGTCAACAAC
CTGTTCGACA AAGAGTATCT CGACTCTGCG CGCTCCGTGA GCTTCAACTC AAGATCGTAC
AACGGCGTAT CGGCAGGCAC ACCGTTTTAC AACGTTGGGG AAGAGCGCAC CTTCAGCGCC
TCACTGGAAG CCACGTTCTA A
|
|---|
| Protein sequence | MKPFKLSGVC LSVVGALLAG SALAEDATNV GTINVQGQPL GAGLMVQEDS AKSRSTVTKD
ALDKMPAAGN AIDKLKYTAG LNVSSNDASG LSGVSYTMRG MSADQVGLSS DGIPVNDSGD
YAVYPNGMGD PENLEQIFVT QGSSEMDGPH IGASGGNIGL VSHRPAKDFG GFVKQTFGSN
NLSKTFARLE TGKHNGFSSW LSYSYTDSDK WRGAGYSRAD KVEWNGLYEH ENGHSSSLIV
KYNQQDTINY STLSKRQFEQ NGRKMDYATT PVYNSRGQIS QYYKINRNNF ETLNVTFTQK
LQLRDNLALT LQPYYFSTNG GSHGSGSASV LSATSDRAGN YDLSNLTSNT YYRPSWTETW
RPGITTKLKW DLNDEHSLDI GYWFERARQR QTQPFIPIKS DGTPANISGK PGDADQITDA
NGKVVQGRNQ FTVTPAHKIW VQDTWFFSPE WTFSGGLAYQ HVERDGTNLG SLYNVAEKKN
KKYHEFLPSF NAAYRINTEN QVFYNITRNM RTPPNYVLYN VGDSINTKPE LSWNQELGWR
FQDEDMLLSA SLFFIQFTDR QISSRDANGD YEMINAGKVE NKGLELEWSG KLPHNFNYFA
AYTYTDTEQK NNLATSGSQL PTTGKQVANA PKNMLNLGVG YDDGLYYAGV NSRYVGSFYG
DMTNDEKIGG RTVFDLSAGV YLPVDKKIVK SATLRFGVNN LFDKEYLDSA RSVSFNSRSY
NGVSAGTPFY NVGEERTFSA SLEATF
|
|---|
| |