| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0770 |
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| Symbol | |
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| ID | 8131695 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 901465 |
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| End bp | 902664 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644864054 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_003016360 |
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| Protein GI | 253687170 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0433625 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAATCAC GATTTTTTAC ACGACGCCGT ACGACGATCG CGCTTGGTGT TATCGCCGCT
GCCGTACTTA TTCATCTGTT TTTCAACAAG CCAGCACCCG CGCCAAGCAC GATGACCACC
GCCGCAGAGA TTGCGGATCT CGAACAGACG GTACTCGCTG ACGGCAAAAT TGAGGCGCAG
AAACAGGTCA GCGTCGGTGC TCAAGCCTCG GGACAAATCA AAGCGCTGCA CGTCGAACTC
GGCGATAAGG TCACAAAAGG GCAATTGATC GCCGAGATTG ATGACCTCAC CCAGCAGGAC
ACGTTAAGAA ATGGCGAAGC GGCGCTAAAA AACATTCAGG CTCAGCGAAC CGCCAAACTG
GCGGAATTGC GTAACAACGA ATTGAGCTGG CAGCGTCAGC AAATGTTGAT GAAACGCGGC
GTTGGCGCTC AGGCCGACTA CGATAGCGCG AAAGCCACGC TCGACGCCAC CCGAGCCAAT
ATCGATGCGC TGGACGCCCA GATCGTTCAG GCACAAATTA CCGTCAACAC CGCCAAGGTT
AACCTCGGTT ATACCCAGAT TCGTTCGCCG ATGGATGGCA CCGTGGTGGC GATTCCGGTT
GAAGCGGGCC AAACGGTCAA CGCCATCCAG ACCACGCCGA CCATTGCCAA AGTCGCCAAT
CTGGACACCA TGACCATCAA GGTGAAGATT TCAGAAGCCG ACGTCGTCAA AGTGAAAACC
GGCATGCCCG TGTGGTTCAG TATTCTGGGC GAACCGAATA AGCGTTACGA AGCCACGCTA
AGCTCGATTG AACCCGCGCC GGACTCTATC AATACGGATT CAACCACGAC GTCATCCAGT
TCCAGCAGCA GCACCAGTTC CTCATCCAGC ACCGCGATCT ATTACAACGG CCTGTTTGAT
GTGAAGAACC CTGACGGCGT ATTGCGCATT TCCATGACGG CACAGGTGTA TATTCTGCTG
TCTTCGGTGA AAAATGCCAT TGTCGTCCCA GCGACGGCAT TAACCTCGCG CAATGGCATG
TGGTACGTGC AGGTCATGAA TGCGAACAAG AAGATCGAAT CGCGGCTGGT CACGCTCGGC
CTCAATGATA ACGTGCGCAC CCAGATTCGT TCGGGGCTCA GCGTTGGGGA GCAGGTGGTT
GTCAGCCCGT CGTCCGGTGA TGTCGCGTCC ACGCATCCCG GCCCACCGAT GGGGATGTAA
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| Protein sequence | MQSRFFTRRR TTIALGVIAA AVLIHLFFNK PAPAPSTMTT AAEIADLEQT VLADGKIEAQ
KQVSVGAQAS GQIKALHVEL GDKVTKGQLI AEIDDLTQQD TLRNGEAALK NIQAQRTAKL
AELRNNELSW QRQQMLMKRG VGAQADYDSA KATLDATRAN IDALDAQIVQ AQITVNTAKV
NLGYTQIRSP MDGTVVAIPV EAGQTVNAIQ TTPTIAKVAN LDTMTIKVKI SEADVVKVKT
GMPVWFSILG EPNKRYEATL SSIEPAPDSI NTDSTTTSSS SSSSTSSSSS TAIYYNGLFD
VKNPDGVLRI SMTAQVYILL SSVKNAIVVP ATALTSRNGM WYVQVMNANK KIESRLVTLG
LNDNVRTQIR SGLSVGEQVV VSPSSGDVAS THPGPPMGM
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