| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0762 |
|---|
| Symbol | |
|---|
| ID | 8131687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 891741 |
|---|
| End bp | 893414 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644864046 |
|---|
| Product | ABC transporter domain protein |
|---|
| Protein accession | YP_003016352 |
|---|
| Protein GI | 253687162 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4178] ABC-type uncharacterized transport system, permease and ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGAAGG TTATGGCACA GTTTGTCGAT CTGTGCCGTC CCTTCTGGGG CGGCAAACGC
AGCTGGCAGG CATGGCTCCT ACTGCTCGTA ACCATTTCGA TGGGTGGGAT GATCGTCTAT
CTCAATGTGT TGTTAAACGA GTGGAGTAAG ACGTTTTATG ATGCGTTAGA CGCATTCGAC
AGCAATTTGC TGCTGTCTCT GATGAAAGAA TACGGCGTTT ACATCCTGCT CTATATCGGG
TCGATCGTGT ATCAGGAGTG GTTTACCAAA CTGCTGATTA TCCGCTGGCG TACCGCGTTA
ACCGCTGAGC TGGTAGATAG CTGGCTGGCG AAGCGGGCAT TTTATCGGAT GTCAGTTGCG
GGCAAGATTG ATAACCCAGA CCAGCGTATT GCCGAAGATA TCAACCTGTT TGTCGACAAA
GCCGTTAGTC TGGTCATCGA ATTTTTGATC GTGACCGCTC GTTTGTTCTC TTTCGTCGTC
ATTCTGTGGG GATTATCGGG CGTTCAGCGC TTTACCCTGT TTGGCAAAGA GTGGGTAATC
GAAGGTTATC TGGTCTGGAT AGCTATTCTG TATACGCTGC TCGGCAGCCT GATTACGCAT
GTGGTCGGGA AACGTCTGCA TAATATTAAT TATGAGAAGC AAAAGGCAGA GGCCGATTTC
CGTGCGGCGC TGCTGCGTAA GCATGATAAC GCCGAGCAAA TCGCGCTGTA CGGCGGCGAA
GCGCAAGAGA AAAGCCATCT TCAGCGGCAT TTCTCTGCCA TCGTGTCGAA CTGGGGGCGT
TTTATGAATG CCGAGCGTAA TCTGGGCTTC TTCACCACAG GCTATATGCG TGTAAGCCAG
ATTGTGCCGA TCTTTGCCGC TTTGCCTGCT TTCCTGAGTA AAACAGTAAC GCTGGGCGGG
TTGATGCAGA TCCGCGGGGC GTTTGCGCAA GTGCACGGTG CGTTGAGCTG GTTTATCCAT
AAGTACAAAG AGTTCGTGAT TCTTTCTGCC AGTATGGCGC GTTTGAGCCA GTTTAAGGAA
GAAATCAAAC GTCACCAGTC TGAACAGATC GATGCGCCGG TAGGACAGGA TTTACGTATT
GATCAGCTTT CTTTCACCAC GCCGCAGGGT TCTCCGCTGT TGCAACATGT GGATCTGAGC
TGCGAAGCGG GGAGCTGGAG TAAATTTGCT GGCCGCAGCG GGCTAGGGAA GTCAACGCTG
CTGCGTACGT TAAACGGCCT GTGGCCCTAT TACGATGGTC GCTGGCAGGC ACCGGAAGGG
CGTAGCCTGC TGTTACCGCA GCAAAGCTAT CTGGGGCAGG GGACGCTGGC GGAGATTCTC
TGCTATCCGC ACCCGCCGCT GGCTGACAGC GAGATGCTGC GTCAGACGCT GGATAGCGTC
GGGCTCGGCG CGTGGCGCGA TCGCCTGGAT GAGCAACTGA ATTGGGATCG GGTATTCTCC
GGCGGGGAAC GGCAGCGTGT CGCCTTTGCC CGCGCGCTGA TTGCCAAACC TGATACGCTC
TATCTGGATG AAGCGACCAG CAATCTGGAT CATGACGCCG CCAGGCAGCT TTTGGCGCTG
GTCAAGATGG TGTTGCCTGC GTGTACCGTG GTGGCGATTA CGCACCAGAC GGAGCTGGAC
GATCTGTTCT CGCATCGTTA TGACTTAACG GATTTTGCCT CACAGCGCAG TTGA
|
|---|
| Protein sequence | MKKVMAQFVD LCRPFWGGKR SWQAWLLLLV TISMGGMIVY LNVLLNEWSK TFYDALDAFD
SNLLLSLMKE YGVYILLYIG SIVYQEWFTK LLIIRWRTAL TAELVDSWLA KRAFYRMSVA
GKIDNPDQRI AEDINLFVDK AVSLVIEFLI VTARLFSFVV ILWGLSGVQR FTLFGKEWVI
EGYLVWIAIL YTLLGSLITH VVGKRLHNIN YEKQKAEADF RAALLRKHDN AEQIALYGGE
AQEKSHLQRH FSAIVSNWGR FMNAERNLGF FTTGYMRVSQ IVPIFAALPA FLSKTVTLGG
LMQIRGAFAQ VHGALSWFIH KYKEFVILSA SMARLSQFKE EIKRHQSEQI DAPVGQDLRI
DQLSFTTPQG SPLLQHVDLS CEAGSWSKFA GRSGLGKSTL LRTLNGLWPY YDGRWQAPEG
RSLLLPQQSY LGQGTLAEIL CYPHPPLADS EMLRQTLDSV GLGAWRDRLD EQLNWDRVFS
GGERQRVAFA RALIAKPDTL YLDEATSNLD HDAARQLLAL VKMVLPACTV VAITHQTELD
DLFSHRYDLT DFASQRS
|
|---|
| |