Gene PC1_0566 details

Gene Information

• Locus tag: PC1_0566
• Symbol: hflB
• ID: 8131484
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 653108
• End bp: 655057
• Gene Length: 1950 bp
• Protein Length: 649 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 644863845
• Product: ATP-dependent metalloprotease
• Protein accession: YP_003016157
• Protein GI: 253686967
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0465] ATP-dependent Zn proteases
• TIGRFAM ID: [TIGR01241] ATP-dependent metalloprotease FtsH

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.000344177
• Plasmid hitchhiking: No
• Plasmid clonability: unclonable

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAGTGACA TGGCGAAAAA CCTAATTCTC TGGTTAGTCA TCGCAGTTGT GCTGATGTCT 
GTTTTCCAGA GCTTTGGGCC CAGCGAGTCG AATGGCCGTA GGGTGGATTA TTCAACCTTC 
TTGACTGAAG TGAATCAGGA TCAGGTCCGT GAAGCACGTA TTAACGGGCG TGAGATCAGT 
GTTATCAAAA AAGACAGCAA CAGATACACG ACTTACATTC CTGTCAATGA CCCCAAGCTA 
CTGGATAACC TGCTAACGAA GAACGTGAAA GTCGTTGGTG AGCCACCGGA AGAGCCGAGC 
TTGCTGGCTT CTATCTTTAT TTCCTGGTTC CCGATGCTGT TACTGATTGG TGTCTGGATC 
TTCTTCATGC GCCAAATGCA AGGCGGCGGC GGTAAAGGTG CCATGTCCTT CGGCAAGAGC 
AAAGCGCGTA TGCTGACTGA AGATCAGATC AAGACGACGT TTGCTGATGT AGCCGGTTGC 
GACGAAGCGA AAGAAGAAGT TAGCGAACTG GTCGAATACC TGCGTGAACC TAGCCGTTTC 
CAGAAGCTGG GCGGTAAGAT TCCGAAAGGC ATTCTGATGG TCGGCCCGCC GGGAACGGGT 
AAAACGTTGC TGGCGAAAGC GATTGCCGGT GAAGCGAAAG TGCCTTTCTT TACGATTTCC 
GGTTCTGACT TCGTTGAAAT GTTTGTGGGT GTCGGTGCTT CTCGTGTCCG TGACATGTTC 
GAACAGGCGA AGAAGGCTGC ACCTTGTATC ATCTTTATCG ATGAAATCGA CGCCGTTGGC 
CGTCAGCGTG GCGCAGGTTT AGGCGGTGGT CACGATGAAC GTGAACAAAC GCTGAACCAG 
ATGCTGGTTG AGATGGACGG CTTTGAAGGC AACGAAGGTA TTATTGTTAT CGCGGCGACT 
AACCGTCCCG ATGTGCTTGA CCCAGCTTTG CTGCGCCCCG GTCGTTTTGA CCGTCAGGTT 
GTGGTTGGCC TGCCAGATGT TCGCGGTCGT GAACAGATTC TGAAAGTACA TATGCGTCGC 
GTACCGTTGT CTCCAGATAT CGATGCGTCA GTTATCGCTC GCGGTACACC AGGTTTCTCT 
GGTGCGGACT TGGCTAACTT GGTTAACGAA GCCGCATTGT TCTCTGCTCG TGGCAACAAA 
CGCGTTGTTT CGATGGTGGA GTTCGAGAAA GCGAAAGACA AGATCATGAT GGGTGCTGAG 
CGCCGTTCCA TGGTCATGAC CGAAAAGCAG AAAGAATCGA CGGCATACCA TGAAGCGGGA 
CACGCTATCA TCGGTCGTCT GGTGCCAGAG CACGACCCAG TCCATAAAGT GACGATCATT 
CCACGTGGTC GCGCGCTGGG CGTGACGTTC TTCCTGCCTG AAGGTGATGC GATCAGCGCC 
AGCCGTCAGA AACTGGAAAG CCAAATCTCT ACGCTGTACG GTGGTCGGCT GGCCGAAGAA 
ATCATTTACG GCGTGGAGCA TGTTTCGACT GGTGCGTCCA ATGACATCAA AGTTGCAACG 
TCGATTGCTC GAAACATGGT GACGCAGTGG GGCTTCTCTG AAAAGCTGGG TCCATTGCTT 
TATGCGGAAG AAGAGGGTGA AGTATTCCTC GGTCGTTCTG TAGCAAAAGC CAAGCACATG 
TCAGATGAAA CGGCGCGTAT CATCGATCAG GAAGTGAAAT CACTGATTGA ACGCAACTAC 
GTGCGTGCTC GTGAGCTGTT GATGGCTAAT ATGGACATCC TTCACTCGAT GAAAGATGCC 
TTGATGAAGT ATGAGACCAT CGATGCGCCG CAGATTGATG ACCTGATGGG GCGTAAGAAA 
GAGGTTCGTC CGCCTGCGGG TTGGGAAGAG TCTCGTTCTG ACAACGATTC CGGCAACGGC 
GGTGGGACAC CTAAAGCCCC TACGCCAGTG GATGAGCCGC AGACGCCTAA TCCCGGTAAC 
ACCCTATCAG AGCAAGCTGA CGACAAATAA 

 

Protein sequence

MSDMAKNLIL WLVIAVVLMS VFQSFGPSES NGRRVDYSTF LTEVNQDQVR EARINGREIS 
VIKKDSNRYT TYIPVNDPKL LDNLLTKNVK VVGEPPEEPS LLASIFISWF PMLLLIGVWI 
FFMRQMQGGG GKGAMSFGKS KARMLTEDQI KTTFADVAGC DEAKEEVSEL VEYLREPSRF 
QKLGGKIPKG ILMVGPPGTG KTLLAKAIAG EAKVPFFTIS GSDFVEMFVG VGASRVRDMF 
EQAKKAAPCI IFIDEIDAVG RQRGAGLGGG HDEREQTLNQ MLVEMDGFEG NEGIIVIAAT 
NRPDVLDPAL LRPGRFDRQV VVGLPDVRGR EQILKVHMRR VPLSPDIDAS VIARGTPGFS 
GADLANLVNE AALFSARGNK RVVSMVEFEK AKDKIMMGAE RRSMVMTEKQ KESTAYHEAG 
HAIIGRLVPE HDPVHKVTII PRGRALGVTF FLPEGDAISA SRQKLESQIS TLYGGRLAEE 
IIYGVEHVST GASNDIKVAT SIARNMVTQW GFSEKLGPLL YAEEEGEVFL GRSVAKAKHM 
SDETARIIDQ EVKSLIERNY VRARELLMAN MDILHSMKDA LMKYETIDAP QIDDLMGRKK 
EVRPPAGWEE SRSDNDSGNG GGTPKAPTPV DEPQTPNPGN TLSEQADDK