| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0548 |
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| Symbol | |
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| ID | 8131466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 636366 |
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| End bp | 638204 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644863827 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_003016139 |
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| Protein GI | 253686949 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.128359 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGCAAA ACCCGCAGTC ACAGCTGAAG CTGCTTGTCA CCCGTGGTAA GGAGCAAGGC
TACCTGACCT ATGCTGAGGT CAATGACCAT CTGCCGGAAG ATATCATCGA CTCGGATCAG
ATCGAAGATA TCATCCAGAT GATTAACGAC ATGGGCATCC AGGTGATGGA AGAAGCACCG
GATGCAGACG ATCTGTTGCT GGCCGAAAAC ACCAATGATG CCGATGAAGA TGCGGCAGAG
GCTGCTGCGC AGGTTCTATC CAGCGTTGAA TCGGAAATTG GTCGCACTAC CGATCCGGTT
CGCATGTACA TGCGTGAAAT GGGTACCGTT GAGCTGTTGA CGCGTGAAGG CGAGATCGAT
ATCGCCAAAC GTATCGAAGA CGGTATCAAC CAGGTTCAGT GCTCTGTTGC CGAGTATCCT
GAAGCCATCA CTTACCTGCT GGAACAATAC GATCGCGTTG AAGCGGGCGA AAGCCGCCTG
TCCGACCTGA TCACAGGTTT CGTCGATCCT AATGCGGAAG AGGACATTGC CCCTACCGCG
ACGCATGTTG GCTCCGAGCT TTCGAGCGAA GAAATGGATG ATGACGACGA AGAATCCGAA
GACGACGACG ATTCTGAAGA CGATAACAGC ATCGATCCTG AACTGGCGCG TGAGAAGTTC
ACCGAGCTGC GTGATCAATA TGAAACCACA CGCAAGGTGA TCAAAGAACA CGGTCGCAGC
CATGCACTGG CAGTACAGGA AATCCTGAAC CTGTCTGAAG TCTTCAAACA GTTCCGTCTG
GTGCCGAAAC AGTTCGATTT CCTGGTTAAC AGCATGCGTT CCATGATGGA TCGCGTCCGT
ACTCAGGAAC GTTTGATCAT CAAACTGTGC GTTGAACAAT GCAAAATGCC GAAGAAAAAC
TTCGTCACCA TGTTCACTGG CAATGAAACC AACAGCACCT GGTTTGCCGC AGCCGTCGCG
ATGGGCAAAC CTTGGTCTGA AAAGCTGAAT GATGTTGAAG AAGACGTCAC CCGCAGCCTG
CAAAAACTGC AACAGATCGA AGAAGAAACC GGTCTGACAA TCGAGCAGGT GAAAGACATC
AACCGCCGTA TGTCGATTGG TGAAGCAAAA GCACGTCGCG CCAAGAAAGA AATGGTGGAA
GCCAACCTGC GTCTGGTTAT TTCTATCGCG AAGAAATACA CCAACCGCGG CTTGCAGTTC
CTCGATCTGA TTCAGGAAGG CAACATCGGT CTGATGAAAG CGGTAGATAA GTTTGAATAT
CGCCGTGGCT ACAAATTCTC GACCTATGCA ACCTGGTGGA TCCGTCAGGC AATCACCCGT
TCTATCGCCG ATCAGGCGCG TACTATCCGT ATTCCGGTAC ACATGATTGA GACGATCAAC
AAACTGAACC GTATCTCTCG TCAGATGTTG CAGGAAATGG GTCGCGAGCC GACGCCGGAA
GAGTTGGCTG AGCGTATGCT GATGCCGGAA GACAAGATCC GTAAAGTGCT GAAGATCGCG
AAAGAGCCGA TTTCTATGGA AACCCCGATT GGTGATGATG AAGATTCACA TCTGGGCGAT
TTCATCGAAG ATACGACGCT GGAGCTGCCG CTGGATTCCG CAACGTCGGA AAGCCTGCGT
TCTGCGACAC ATGACGTACT GGCTGGCCTG ACCGCTCGTG AAGCGAAAGT CCTGCGCATG
CGTTTCGGTA TCGATATGAA CACCGACCAT ACGCTGGAAG AAGTGGGCAA ACAGTTTGAC
GTTACACGTG AACGTATTCG TCAGATCGAA GCGAAAGCGC TGCGTAAACT GCGCCACCCA
AGCCGTTCCG AAGTGCTGCG TAGCTTCCTG GATGATTAA
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| Protein sequence | MEQNPQSQLK LLVTRGKEQG YLTYAEVNDH LPEDIIDSDQ IEDIIQMIND MGIQVMEEAP
DADDLLLAEN TNDADEDAAE AAAQVLSSVE SEIGRTTDPV RMYMREMGTV ELLTREGEID
IAKRIEDGIN QVQCSVAEYP EAITYLLEQY DRVEAGESRL SDLITGFVDP NAEEDIAPTA
THVGSELSSE EMDDDDEESE DDDDSEDDNS IDPELAREKF TELRDQYETT RKVIKEHGRS
HALAVQEILN LSEVFKQFRL VPKQFDFLVN SMRSMMDRVR TQERLIIKLC VEQCKMPKKN
FVTMFTGNET NSTWFAAAVA MGKPWSEKLN DVEEDVTRSL QKLQQIEEET GLTIEQVKDI
NRRMSIGEAK ARRAKKEMVE ANLRLVISIA KKYTNRGLQF LDLIQEGNIG LMKAVDKFEY
RRGYKFSTYA TWWIRQAITR SIADQARTIR IPVHMIETIN KLNRISRQML QEMGREPTPE
ELAERMLMPE DKIRKVLKIA KEPISMETPI GDDEDSHLGD FIEDTTLELP LDSATSESLR
SATHDVLAGL TAREAKVLRM RFGIDMNTDH TLEEVGKQFD VTRERIRQIE AKALRKLRHP
SRSEVLRSFL DD
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