Gene PC1_0397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0397 
Symbol 
ID8131312 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp453006 
End bp454427 
Gene Length1422 bp 
Protein Length473 aa 
Translation table11 
GC content56% 
IMG OID644863676 
Productouter membrane efflux protein 
Protein accessionYP_003015990 
Protein GI253686800 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTCGAA TAACACACAA AAAAATCCGG CCTCTGACTT ATTTCCCCAT CGCACTGCTG 
CTATTGCAGT GCTGGTCACC CACAACATGG GGGCAAACCA TTTCGTTTAA TCAGGCCTGG
GCCCGCCTGC TGCAAAGCGA TGACAGCATT GCCGCCGAAC ACGCCGGGGT CGATCGCGCA
CAGTCTCTGA AAGAATCCGC CAAAGGCCTC TATTGGCCAC AGGTCAACGT GGGCGCAAGT
TATACCCGCC TTGATAAGCC TGTCGAACTG GATGCGCGCG ACTTAAACCC GTTGTCGAAT
CATCGGGACA TCTTTGCCGC GCTCAATCAG CTGATTAATA TCAGCGGCAA CCCTTTTGTC
ACCCGTTTTA CAGAGCAAAA TGTGGTCACC AGCTCCGTTC AGGTCGTCTG GCCGTTATTC
ACCGGAGGAC GGATTGATGC AGCGCAGTCG ATCCGCGCCG CGCAGGTCAA CGAGGCAGAG
CAAATGCTGA TCGTCCGCAC GCTGGCGCAG TTTGAGGCGC TGGCACAGAC TTACTACGGC
GTGGTGATGG CGCATCAGGT AATGAAAACG CGTCAGGATA TCGAGAAAGG CATGGCGCAG
CATTATGACC ACGCTCGTAA ACTGGAAGCA CAGGGGCAAA TCGCCCGAGT CGAGGTGCTG
TCTGCCCAAT CGGCTTATGA CATGGCGCGT ATCGAAACAC AAAAGGCGCG GCGGAGCATG
GAGACAACCG AAATGGTCTT CGCCAAGCTC ATCAAAACCG AAGGCGCAAC GCCTTCCTCT
CCGCTGTTCG TCAACAAAGC GCTTCCCGAA CTGCCTGCGC TGGTGAAACA AACGCTCAAT
ACCCATCCCG GCTTAAAAGT GCTCTCCGCC AAGCGCGATC AGGCCAAGGA TCTTATCCGT
ATTGAACGCG CCAAATACGC TCCCGACGTG TTTCTGTTCG GCAACTATCA ACTCTATGAA
CAGGACACGC TGGCCGCCAG AACGACACCG GACTGGATGG TGGGCGTCGG CGTTTCCGTC
CCACTCATCA GCCGTGAAGG CCGTTCCGAC AATATCGCCG CCGCGAAAAG CGCAGAAATG
CAGGTTAACT ATCTGGAAGC CGATATGCGG CAAAACCTTG AGATAATGGT CGAGAGCACG
TGGCGAGAAG CCCGACTGGC GTTGGAAGAG TTCAATTCCC TGTCTTCGAC GCAAAAACTG
GCCGAAGAGA ACGTGCGGTT ACGCAACAAA GCGTTTATGC AGGGCATGTC TACCTCGCTG
GACGTCGTGG ATGCGCTAAA CCAGTTAGCT GGCGCCAAAA CGCAGCGAGC CTCCGCCGCC
TATCGTTACG TGGTTTCCAT CGCCAGATTG ATGGCCATTT CCGGCCAGAT AACCCGCTTC
TCTGACTACC AGACCCAACA CGCCATACAG GTGATGCCAT GA
 
Protein sequence
MPRITHKKIR PLTYFPIALL LLQCWSPTTW GQTISFNQAW ARLLQSDDSI AAEHAGVDRA 
QSLKESAKGL YWPQVNVGAS YTRLDKPVEL DARDLNPLSN HRDIFAALNQ LINISGNPFV
TRFTEQNVVT SSVQVVWPLF TGGRIDAAQS IRAAQVNEAE QMLIVRTLAQ FEALAQTYYG
VVMAHQVMKT RQDIEKGMAQ HYDHARKLEA QGQIARVEVL SAQSAYDMAR IETQKARRSM
ETTEMVFAKL IKTEGATPSS PLFVNKALPE LPALVKQTLN THPGLKVLSA KRDQAKDLIR
IERAKYAPDV FLFGNYQLYE QDTLAARTTP DWMVGVGVSV PLISREGRSD NIAAAKSAEM
QVNYLEADMR QNLEIMVEST WREARLALEE FNSLSSTQKL AEENVRLRNK AFMQGMSTSL
DVVDALNQLA GAKTQRASAA YRYVVSIARL MAISGQITRF SDYQTQHAIQ VMP