Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0397 |
Symbol | |
ID | 8131312 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 453006 |
End bp | 454427 |
Gene Length | 1422 bp |
Protein Length | 473 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644863676 |
Product | outer membrane efflux protein |
Protein accession | YP_003015990 |
Protein GI | 253686800 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTCGAA TAACACACAA AAAAATCCGG CCTCTGACTT ATTTCCCCAT CGCACTGCTG CTATTGCAGT GCTGGTCACC CACAACATGG GGGCAAACCA TTTCGTTTAA TCAGGCCTGG GCCCGCCTGC TGCAAAGCGA TGACAGCATT GCCGCCGAAC ACGCCGGGGT CGATCGCGCA CAGTCTCTGA AAGAATCCGC CAAAGGCCTC TATTGGCCAC AGGTCAACGT GGGCGCAAGT TATACCCGCC TTGATAAGCC TGTCGAACTG GATGCGCGCG ACTTAAACCC GTTGTCGAAT CATCGGGACA TCTTTGCCGC GCTCAATCAG CTGATTAATA TCAGCGGCAA CCCTTTTGTC ACCCGTTTTA CAGAGCAAAA TGTGGTCACC AGCTCCGTTC AGGTCGTCTG GCCGTTATTC ACCGGAGGAC GGATTGATGC AGCGCAGTCG ATCCGCGCCG CGCAGGTCAA CGAGGCAGAG CAAATGCTGA TCGTCCGCAC GCTGGCGCAG TTTGAGGCGC TGGCACAGAC TTACTACGGC GTGGTGATGG CGCATCAGGT AATGAAAACG CGTCAGGATA TCGAGAAAGG CATGGCGCAG CATTATGACC ACGCTCGTAA ACTGGAAGCA CAGGGGCAAA TCGCCCGAGT CGAGGTGCTG TCTGCCCAAT CGGCTTATGA CATGGCGCGT ATCGAAACAC AAAAGGCGCG GCGGAGCATG GAGACAACCG AAATGGTCTT CGCCAAGCTC ATCAAAACCG AAGGCGCAAC GCCTTCCTCT CCGCTGTTCG TCAACAAAGC GCTTCCCGAA CTGCCTGCGC TGGTGAAACA AACGCTCAAT ACCCATCCCG GCTTAAAAGT GCTCTCCGCC AAGCGCGATC AGGCCAAGGA TCTTATCCGT ATTGAACGCG CCAAATACGC TCCCGACGTG TTTCTGTTCG GCAACTATCA ACTCTATGAA CAGGACACGC TGGCCGCCAG AACGACACCG GACTGGATGG TGGGCGTCGG CGTTTCCGTC CCACTCATCA GCCGTGAAGG CCGTTCCGAC AATATCGCCG CCGCGAAAAG CGCAGAAATG CAGGTTAACT ATCTGGAAGC CGATATGCGG CAAAACCTTG AGATAATGGT CGAGAGCACG TGGCGAGAAG CCCGACTGGC GTTGGAAGAG TTCAATTCCC TGTCTTCGAC GCAAAAACTG GCCGAAGAGA ACGTGCGGTT ACGCAACAAA GCGTTTATGC AGGGCATGTC TACCTCGCTG GACGTCGTGG ATGCGCTAAA CCAGTTAGCT GGCGCCAAAA CGCAGCGAGC CTCCGCCGCC TATCGTTACG TGGTTTCCAT CGCCAGATTG ATGGCCATTT CCGGCCAGAT AACCCGCTTC TCTGACTACC AGACCCAACA CGCCATACAG GTGATGCCAT GA
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Protein sequence | MPRITHKKIR PLTYFPIALL LLQCWSPTTW GQTISFNQAW ARLLQSDDSI AAEHAGVDRA QSLKESAKGL YWPQVNVGAS YTRLDKPVEL DARDLNPLSN HRDIFAALNQ LINISGNPFV TRFTEQNVVT SSVQVVWPLF TGGRIDAAQS IRAAQVNEAE QMLIVRTLAQ FEALAQTYYG VVMAHQVMKT RQDIEKGMAQ HYDHARKLEA QGQIARVEVL SAQSAYDMAR IETQKARRSM ETTEMVFAKL IKTEGATPSS PLFVNKALPE LPALVKQTLN THPGLKVLSA KRDQAKDLIR IERAKYAPDV FLFGNYQLYE QDTLAARTTP DWMVGVGVSV PLISREGRSD NIAAAKSAEM QVNYLEADMR QNLEIMVEST WREARLALEE FNSLSSTQKL AEENVRLRNK AFMQGMSTSL DVVDALNQLA GAKTQRASAA YRYVVSIARL MAISGQITRF SDYQTQHAIQ VMP
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