| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0396 |
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| Symbol | |
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| ID | 8131311 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 452017 |
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| End bp | 453009 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644863675 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_003015989 |
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| Protein GI | 253686799 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACAAT CTCTTTCGCG TTCAAAGCGT AAATGGTTCC TTCAGGCCAT ACTGCTGATT
GTGGTGGTCT GGATAGCGTA TCGCTTCTGG CTCGCCTATC AGCCCGAACC AATTCGCTTA
CAGGGACAAA TAGAAGCACA GCAATATTCG GTGTCATCAA AAGTGGCTGG CCGTATTGCA
GAAGTGCCGG TACAAAAAGG CCAGCAGCTT GACGTGGGCG ATCTCGTCTT CACACTCCTG
ACGCCGGAGC TGGACGCGAA GTTGGAACAG GCGAAAGCGG GTGAAGCCGC AGCAGGTGCC
GTGGCGCTGG AAGCGCAAAA AGGCGCGCGG GAGCAGCAGA TCGCCGCCGC CAAAGATCAA
TGGCAAAAGG CCAAAGCCGG TTCCGAGCTA AGCCATAAGA CTTATCTGCG CGTACAAAAT
CTCTATCAGG AAGGCGTGTT GCCGCTGCAA AAAAGGGATG AAGCCAAAGC CTCCTGGGAT
GCCGCACGCT ATACCGAAGG GATGGCGTGG CAGGAATATC AAATGGCGCA GGAAGGTACG
CGGAAAGAAA CTCAGGTCGC CGCAGAGGAA AAAGCCCGTA TGGCCGCTGG CTCCGTCGCC
GAAGTGGAGG CCTATCTGGC AGAAGCCCGC GTCGTCAGCC CGCACACCGG CGAAGTCAGC
AACGTGCTGT TACGCAGCGG TGAAATTGCG CCACAGGGCT TCCCTGTGGT CACGCTGCTG
GACATGAGCG ACATCTGGAT CCAACTGGCG GTACGCGAAG ATCTCCTTGA GCGCTTTGCG
ATGGGCACCG AGTTTGAAGC ACGTATCCCG GCGCTGAACA ACCAAACATT CCGGTTTAAG
GTGTCTTACG TGTCCGTCAT GGGGGATTTC GCCACGTGGC GCGCAACGGA TACCCGACAG
GGATTTGATA TGCGAACGTT CGAAGTGGAG GCGCGTCCAA TTGAACCGAT TAATGGGCTG
CGCGTCGGCA TGAGCGCACT GGTAGAAATG TGA
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| Protein sequence | MTQSLSRSKR KWFLQAILLI VVVWIAYRFW LAYQPEPIRL QGQIEAQQYS VSSKVAGRIA
EVPVQKGQQL DVGDLVFTLL TPELDAKLEQ AKAGEAAAGA VALEAQKGAR EQQIAAAKDQ
WQKAKAGSEL SHKTYLRVQN LYQEGVLPLQ KRDEAKASWD AARYTEGMAW QEYQMAQEGT
RKETQVAAEE KARMAAGSVA EVEAYLAEAR VVSPHTGEVS NVLLRSGEIA PQGFPVVTLL
DMSDIWIQLA VREDLLERFA MGTEFEARIP ALNNQTFRFK VSYVSVMGDF ATWRATDTRQ
GFDMRTFEVE ARPIEPINGL RVGMSALVEM
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