| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0313 |
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| Symbol | tolC |
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| ID | 8131227 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 365493 |
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| End bp | 366884 |
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| Gene Length | 1392 bp |
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| Protein Length | 463 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644863593 |
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| Product | outer membrane channel protein |
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| Protein accession | YP_003015908 |
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| Protein GI | 253686718 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAAT TGCTCCCTCT TCTGATTGGT CTGAGCCTGG GCGGTTTTAG CGCCATGAGT
CAGGCGGAAA ACCTGTTACA GGTCTACCAG CAGGCAAAAA GCACCAACCC TGATTTACGC
AGCTCTGCGG CAACCCGCGA CGCCGCGTTT GAAAAAATTA ACGAATCACG TAGCCCGTTA
CTGCCGCAGT TGGGAATCAA CGCCGGTTAT ACCTATAACA AAGGTTACCG TGACAGCAAT
GGCGTCAACA ACAACGAGAA AAGCGCGACA TTGCAGTTAA CCCAGACGCT GTTCGACATG
TCCAAATGGC GTGCGCTGAC GTTGCAGGAA AAACAAGCGG GTATTGAAGA CGTCACCTAT
CAGACAGCCC AGCAAAACCT GATGCTGAAT ACAGCAACCG CCTATTTCAA CGTCCTGCGT
GCCATTGACT CGCTGTCCTA CATCAATGCG CAGAAGCAGG CGATTTATCG CCAGTTAGAC
CAAACGACAC AGCGTTTCAA CGTGGGTCTG GTTGCCATTA CCGACGTCCA GAACGCCCGT
GCCCAGTATG ACAGCGTGTT GGCCAATGAA GTGTTGACGC GTAATACGCT GGATAATGCG
TTGGAATCAC TGCGCCAGAT TACCGGTAAT TTCTACCCGC AGCTGGCCGG CCTGAACATC
GAGCGTTTCT CTACGCAGAA GCCTGAAGCC GTTAACAACC TGCTGAAAGA AGCTGAAAAC
CGCAACCTGA ACCTGCTGTC CGCACGTTTG AGTCAGGATT TGGCCCGTGA GCAGATTCGT
TCCGCTGAAA CAGGCTACAT GCCGACCTTG GATCTCACTG CATCGACGGG CGTGAGCGAT
ACCCGTTATT CAGGTTCCCG CACGAATAGC GGCAACTTCA ATGATACCGA TGCAGGGCAA
CACCGAGTTG GCATTAACTT CACTCTGCCA CTTTATAGCG GCGGCGCGAC CAACTCACAG
GTGAAACAAG CGCAGCACAG CTACGTCAGC GCCAGCGAAC TGCTGGAGAG CGCACACCGT
TCTGTTATCC AGACTGTACG TTCATCGTTT AACAATATTT CTGCCTCCAT CAGCAGCATC
AACGCTTACA AACAGGCTGA AGTGTCTGCA CAAAGCTCTC TGGATGCGAT GGAAGCTGGT
TATCAGGTAG GCACGCGCAC CATCGTTGAC GTACTGGATG CCACCACCAC GCTGTATAAC
GCGAAACAGC AGCTCTCCAG CGCACGCTAT GATTACCTGA TCAATCAGTT AAACATCAAA
TCCGCGCAGG GTACGCTGAA TGAAGCCGAT CTGCAGGCGC TGAATGCGGC ACTGGGTCAG
CCGGTTTCAA CGACACCGAC CGTAACGGAC AACAGCGCTC CGCTGGCAAC AACCGCCTCG
GCACAGCGTT AA
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| Protein sequence | MKKLLPLLIG LSLGGFSAMS QAENLLQVYQ QAKSTNPDLR SSAATRDAAF EKINESRSPL
LPQLGINAGY TYNKGYRDSN GVNNNEKSAT LQLTQTLFDM SKWRALTLQE KQAGIEDVTY
QTAQQNLMLN TATAYFNVLR AIDSLSYINA QKQAIYRQLD QTTQRFNVGL VAITDVQNAR
AQYDSVLANE VLTRNTLDNA LESLRQITGN FYPQLAGLNI ERFSTQKPEA VNNLLKEAEN
RNLNLLSARL SQDLAREQIR SAETGYMPTL DLTASTGVSD TRYSGSRTNS GNFNDTDAGQ
HRVGINFTLP LYSGGATNSQ VKQAQHSYVS ASELLESAHR SVIQTVRSSF NNISASISSI
NAYKQAEVSA QSSLDAMEAG YQVGTRTIVD VLDATTTLYN AKQQLSSARY DYLINQLNIK
SAQGTLNEAD LQALNAALGQ PVSTTPTVTD NSAPLATTAS AQR
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