| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0289 |
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| Symbol | |
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| ID | 8131202 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 335148 |
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| End bp | 336518 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644863569 |
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| Product | protease Do |
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| Protein accession | YP_003015884 |
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| Protein GI | 253686694 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0319386 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA CATCATTATT ATTTAGTGCA CTGGCAATGA GTATAGGTTT GACCCTGTCC
ACGCTTCCCG TAGCGAATGC TGCGTTGCCT GCCGTGGTAC AAGGGCAACA GACGCCAAGC
CTGGCCCCGA TGCTGGAAAA AGTCTTGCCA GCCGTCGTCA GCGTGCATGT TGAAGGTACA
CAGGTACAGC GCCAGCGCGT ACCGGAGGAG TTCAAGTTCT TCTTTGGTCC GAACTTCCCA
ACGGACAAAC AAAGCTCTCG TCCGTTTGAA GGATTGGGCT CTGGCGTCAT TATTGATGCC
GCAAAAGGTT ACGTGCTCAC CAATAATCAC GTCATCAATA ACGCCGACAA AATTCGCGTC
CAGCTCAATG ACGGGCGTGA GTATGAAGCA AAACTGATTG GTCGCGATGA GCAAACCGAT
ATCGCCCTGC TACAGCTGAA TGACGCCAAG AATCTGGTCG CGGTGAAAAT GGCTGATTCC
GATCAACTCC GCGTCGGTGA CTTCGCCGTT GCCGTGGGTA ACCCGTTCGG CCTTGGTCAG
ACCGCGACAT CCGGCATCAT CTCTGCACTG GGGCGTAGCG GGCTGAATCT GGAAGGGTTG
GAAAACTTCA TCCAGACCGA TGCGTCTATC AACCGTGGTA ACTCCGGCGG TGCGTTGGTT
AACCTCAACG GTGAGCTGAT CGGTATTAAC ACGGCGATTT TGGCGCCGGG CGGCGGGAAC
ATCGGTATCG GTTTCGCTAT CCCCAGCAAC ATGGCTCAAA ATCTGGCACA GCAGCTGGTT
GAATTTGGCG AGGTCAAACG CGGACTGCTG GGTATTAAAG GCAGCGAAAT GACGTCTGAG
ATGGCGAAAG CCTTCAACGT CGATGCACAA CGCGGTGCCT TCGTCAGCGA AGTCTTACCG
AAATCTGCCG CCGCGAAAGC GGGTATCAAG GCGGGCGACG TGTTGACGAC GCTGGATGGT
AAACCGATCA GCAGCTTTGC GGAACTGCGG GCGAAAGTCG GTACTACCGC GCCGGGCAAG
ACCGTGAAAA TCGGCCTGCT GCGTGATGGC AAACCTCAGG AAGTGTCCGT CGTGTTGGAT
AACAGCTCAT CAGCGTCAAC CAGCGCCGAA ACACTTTCAC CGTCATTGCA GGGCGCGTCT
CTGACCAATG GCCAATTGAA AGACGGCAGC AAGGGCGTAC AGATTGATAA CGTCGCCAAA
GACACACCTG CGGCGCAGGT TGGTCTGCAG AAAGGCGATA TCATCATCGG CGTGAACCGT
GAGCGTATTG AAAACATCAC GCAGTTGCGC AAGCTGCTGG AAGCGAAACC TTCCGTTCTG
GCTTTGAATA TCGTCCGGGG CGAAGAAACG ATTTATCTGC TGTTACGTTA A
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| Protein sequence | MKKTSLLFSA LAMSIGLTLS TLPVANAALP AVVQGQQTPS LAPMLEKVLP AVVSVHVEGT
QVQRQRVPEE FKFFFGPNFP TDKQSSRPFE GLGSGVIIDA AKGYVLTNNH VINNADKIRV
QLNDGREYEA KLIGRDEQTD IALLQLNDAK NLVAVKMADS DQLRVGDFAV AVGNPFGLGQ
TATSGIISAL GRSGLNLEGL ENFIQTDASI NRGNSGGALV NLNGELIGIN TAILAPGGGN
IGIGFAIPSN MAQNLAQQLV EFGEVKRGLL GIKGSEMTSE MAKAFNVDAQ RGAFVSEVLP
KSAAAKAGIK AGDVLTTLDG KPISSFAELR AKVGTTAPGK TVKIGLLRDG KPQEVSVVLD
NSSSASTSAE TLSPSLQGAS LTNGQLKDGS KGVQIDNVAK DTPAAQVGLQ KGDIIIGVNR
ERIENITQLR KLLEAKPSVL ALNIVRGEET IYLLLR
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