| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0274 |
|---|
| Symbol | |
|---|
| ID | 8131187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 322548 |
|---|
| End bp | 323981 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644863554 |
|---|
| Product | RNA polymerase factor sigma-54 |
|---|
| Protein accession | YP_003015869 |
|---|
| Protein GI | 253686679 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
|---|
| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0721448 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAG GTTTGCAACT CAGGCTTAGC CAGCAACTGG CCATGACCCC ACAGCTCCAA
CAGGCCATCC GCCTGTTGCA ACTGTCCACG CTTGAATTGC AACAGGAAAT TCAGCAGGCG
CTAGAAAGCA ATCCGTTGCT CGAACAAACG GATCAGCACG ACGAAATCGA GTCATTTGAA
AAGGCAGACA GCGATTCACT GGATACTGGT GAAGCCCTTG AACAAAGGGA CATGCCGGAA
GAATTACCGA TCGATGCCAC CTGGGATGAG ATCTACTCCG CAGGCACGCC ATCGGGCACG
GGCACCGACT ATCGCGATGA AGAACTGCCA ATTTATCAAG GTGAAACCAC GCAAACACTT
CAGGATTACC TGATGTGGCA GGTTGAGCTG ACGCCGTTTT CAGATACCGA CGCGGCCATC
GCGACCTCTA TCGTCGATGC CGTGGACAAC ACCGGCTACC TGACCGTGCC GCTAGAGGAC
ATTCTTGACA GCATCGGCGA TGACGACGTG ACATTGGAAG AAGTCGAAGC CGTACTCAAA
CGCGTACAAC GCTTTGATCC CGTTGGCGTC GCTGCCCGCG ATCTGCGTGA TTGTCTGCTG
GTACAGCTTT CCCAATTCGC CGATAGCACC CCACGTCTGG CCGAAGCTCG CCTGATCGTC
AGCGATCACC TCGATCTGTT AGCCAATCAT GATTTCCGCA GCCTGATCCG CGTGACTCGT
TTGAAAGAAG AGGTGCTGAA AGAAGCACTG GCGTTGATCC AATCGCTCGA TCCACGTCCG
GGGCAGTCGA TCAACACCGG CGAATCCGAA TACGTGATCC CTGACGTGCT GGTACGAAAA
GTTCAAGGCA TTTGGGCCGT TGAACTGAAC ACCGACAGCA TTCCCCGCCT GCAGATTAAC
CAGCAGTATG CAGCGCTGGG CAACAGCGCA CGCAACGACA GCGACGGGCA ATTTATCCGT
AGCAACCTGC AAGAAGCGCG CTGGCTCATC AAGAGTCTGG AAAGTCGCAA TGACACGCTG
CTGAAAGTAA CCCGTTGCAT CGTCGAACAG CAGCAGGATT TCTTCGAGCA GGGTGAAGAA
TTCATGAAGC CCATGGTACT GGCAGACATC GCTCAGGCGG TGGATATGCA TGAATCCACC
ATCTCACGCG TCACGACACA GAAGTTCCTG CACAGTCCAC GCGGCATTTT TGAGCTAAAA
TATTTCTTCT CCAGCCATGT GAATACCGAT AGCGGCGGAG AAGCCTCGTC AACGGCCATC
CGCGCGCTGG TGAAGAAGCT TATTGCGGCG GAAAACCCCG TGAAGCCACT AAGCGATAGC
AAACTGACGG CGCTGCTTTC CGATCAGGGC ATCATCGTGG CGCGCCGTAC CGTTGCAAAA
TACCGAGAGT CTTTATCTAT CCCACCATCA AATCAGCGTA AACAACTGAT TTGA
|
|---|
| Protein sequence | MKQGLQLRLS QQLAMTPQLQ QAIRLLQLST LELQQEIQQA LESNPLLEQT DQHDEIESFE
KADSDSLDTG EALEQRDMPE ELPIDATWDE IYSAGTPSGT GTDYRDEELP IYQGETTQTL
QDYLMWQVEL TPFSDTDAAI ATSIVDAVDN TGYLTVPLED ILDSIGDDDV TLEEVEAVLK
RVQRFDPVGV AARDLRDCLL VQLSQFADST PRLAEARLIV SDHLDLLANH DFRSLIRVTR
LKEEVLKEAL ALIQSLDPRP GQSINTGESE YVIPDVLVRK VQGIWAVELN TDSIPRLQIN
QQYAALGNSA RNDSDGQFIR SNLQEARWLI KSLESRNDTL LKVTRCIVEQ QQDFFEQGEE
FMKPMVLADI AQAVDMHEST ISRVTTQKFL HSPRGIFELK YFFSSHVNTD SGGEASSTAI
RALVKKLIAA ENPVKPLSDS KLTALLSDQG IIVARRTVAK YRESLSIPPS NQRKQLI
|
|---|
| |